TY - JOUR
T1 - 1H NMR-derived serum metabolomics of leukoplakia and squamous cell carcinoma
AU - Gupta, Ashish
AU - Gupta, Shalini
AU - Mahdi, Abbas Ali
N1 - Funding Information:
This work was sponsored by the Department of Biotechnology ( BT/PR6547/GBD/27/450/2012 ), New Delhi, India.
Publisher Copyright:
© 2014 Elsevier B.V.
PY - 2015/2/4
Y1 - 2015/2/4
N2 - Background: Oral cancer (OC) is the sixth commonest cancer worldwide with alarming mortality. If identified at an early stage, the survival rate would be improved. Methods: We appraised the feasibility of using 1H nuclear magnetic resonance (1H NMR) based metabolomics in the identification of signature metabolites in serum from patients suffering with oral leukoplakia (OLK, n=100), oral squamous cell carcinoma (OSCC, n=100), and healthy control (HC, n=75). 1H NMR derived data were processed by principal component analysis (PCA) and orthogonal partial least squares discriminant analysis (OPLS-DA) to reveal discriminating metabolites among these groups. Receiver operating characteristic (ROC) curve evaluation was also executed. Results: NMR-derived serum metabolomics reveals eight differentially expressed biomarkers. Among them four biomarkers (glutamine, propionate, acetone, and choline) were able to accurately (ROC; 0.97) segregate 93.5% of OC cases equated to HC with substantial sensitivity and specificity. Similarly, four biomarkers (glutamine, acetone, acetate, and choline) were able to precisely (ROC; 0.96) discriminate, 92.4% of OLK cases from OSCC with considerable sensitivity and specificity. 1H NMR-based metabolic fingerprint obtained for oral cancer is remarkable, even for OLK stage. Conclusion: There is a systemic metabolic response to initial stage of cancer, which carries immense possibility for early appraisal.
AB - Background: Oral cancer (OC) is the sixth commonest cancer worldwide with alarming mortality. If identified at an early stage, the survival rate would be improved. Methods: We appraised the feasibility of using 1H nuclear magnetic resonance (1H NMR) based metabolomics in the identification of signature metabolites in serum from patients suffering with oral leukoplakia (OLK, n=100), oral squamous cell carcinoma (OSCC, n=100), and healthy control (HC, n=75). 1H NMR derived data were processed by principal component analysis (PCA) and orthogonal partial least squares discriminant analysis (OPLS-DA) to reveal discriminating metabolites among these groups. Receiver operating characteristic (ROC) curve evaluation was also executed. Results: NMR-derived serum metabolomics reveals eight differentially expressed biomarkers. Among them four biomarkers (glutamine, propionate, acetone, and choline) were able to accurately (ROC; 0.97) segregate 93.5% of OC cases equated to HC with substantial sensitivity and specificity. Similarly, four biomarkers (glutamine, acetone, acetate, and choline) were able to precisely (ROC; 0.96) discriminate, 92.4% of OLK cases from OSCC with considerable sensitivity and specificity. 1H NMR-based metabolic fingerprint obtained for oral cancer is remarkable, even for OLK stage. Conclusion: There is a systemic metabolic response to initial stage of cancer, which carries immense possibility for early appraisal.
KW - NMR-spectroscopy
KW - OPLS-DA
KW - Oral cancer
KW - PCA
KW - Serum-metabolomics
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U2 - 10.1016/j.cca.2014.12.003
DO - 10.1016/j.cca.2014.12.003
M3 - Article
C2 - 25499120
AN - SCOPUS:84919798017
SN - 0009-8981
VL - 441
SP - 47
EP - 55
JO - Clinica Chimica Acta
JF - Clinica Chimica Acta
ER -