Structural basis for gate-DNA recognition and bending by type IIA topoisomerases

Ken C. Dong, James M. Berger

Research output: Contribution to journalReview articlepeer-review

210 Scopus citations


Type II topoisomerases disentangle DNA to facilitate chromosome segregation, and represent a major class of therapeutic targets. Although these enzymes have been studied extensively, a molecular understanding of DNA binding has been lacking. Here we present the structure of a complex between the DNA-binding and cleavage core of Saccharomyces cerevisiae Topo II (also known as Top2) and a gate-DNA segment. The structure reveals that the enzyme enforces a 150° DNA bend through a mechanism similar to that of remodelling proteins such as integration host factor. Large protein conformational changes accompany DNA deformation, creating a bipartite catalytic site that positions the DNA backbone near a reactive tyrosine and a coordinated magnesium ion. This configuration closely resembles the catalytic site of type IA topoisomerases, reinforcing an evolutionary link between these structurally and functionally distinct enzymes. Binding of DNA facilitates opening of an enzyme dimerization interface, providing visual evidence for a key step in DNA transport.

Original languageEnglish (US)
Pages (from-to)1201-1205
Number of pages5
Issue number7173
StatePublished - Dec 20 2007
Externally publishedYes

ASJC Scopus subject areas

  • General


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