One influenza virus particle packages eight unique viral RNAs as shown by FISH analysis

Yi Ying Chou, Reza Vafabakhsh, Sultan Doǧanay, Qinshan Gao, Taekjip Ha, Peter Palese

Research output: Contribution to journalArticlepeer-review

107 Scopus citations


Influenza A virus possesses a segmented genome of eight negative-sense, single-stranded RNAs. The eight segments have been shown to be represented in approximately equal molar ratios in a virus population; however, the exact copy number of each viral RNA segment per individual virus particles has not been determined. We have established an experimental approach based on multicolor single- molecule fluorescent in situ hybridization (FISH) to study the composition of viral RNAs at single-virus particle resolution. Colocalization analysis showed that a high percentage of virus particles package all eight different segments of viral RNAs. To determine the copy number of each RNA segment within individual virus particles, we measured the photobleaching steps of individual virus particles hybridized with fluorescent probes targeting a specific viral RNA. By comparing the photobleaching profiles of probes against the HA RNA segment for the wild-type influenza A/Puerto Rico/8/34 (PR8) and a recombinant PR8 virus carrying two copies of the HA segment, we concluded that only one copy of HA segment is packaged into a wild type virus particle.Our results showed similar photobleaching behaviors for other RNA segments, suggesting that for the majority of the virus particles, only one copy of each RNA segment is packaged into one virus particle. Together, our results support that the packaging of influenza viral genome is a selective process.

Original languageEnglish (US)
Pages (from-to)9101-9106
Number of pages6
JournalProceedings of the National Academy of Sciences of the United States of America
Issue number23
StatePublished - Jun 5 2012
Externally publishedYes


  • Genome packaging
  • Single-molecule imaging
  • Viral ribonucleoprotein complex

ASJC Scopus subject areas

  • General


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