Multiomic Network Analysis Identifies Dysregulated Neurobiological Pathways in Opioid Addiction

Kyle A. Sullivan, David Kainer, Matthew Lane, Mikaela Cashman, J. Izaak Miller, Michael R. Garvin, Alice Townsend, Bryan C. Quach, Caryn Willis, Peter Kruse, Nathan C. Gaddis, Ravi Mathur, Olivia Corradin, Brion S. Maher, Peter C. Scacheri, Sandra Sanchez-Roige, Abraham A. Palmer, Vanessa Troiani, Elissa J. Chesler, Rachel L. KemberHenry R. Kranzler, Amy C. Justice, Ke Xu, Dana B. Hancock, Eric O. Johnson, Daniel A. Jacobson

Research output: Contribution to journalArticlepeer-review

Abstract

Background: Opioid addiction is a worldwide public health crisis. In the United States, for example, opioids cause more drug overdose deaths than any other substance. However, opioid addiction treatments have limited efficacy, meaning that additional treatments are needed. Methods: To help address this problem, we used network-based machine learning techniques to integrate results from genome-wide association studies of opioid use disorder and problematic prescription opioid misuse with transcriptomic, proteomic, and epigenetic data from the dorsolateral prefrontal cortex of people who died of opioid overdose and control individuals. Results: We identified 211 highly interrelated genes identified by genome-wide association studies or dysregulation in the dorsolateral prefrontal cortex of people who died of opioid overdose that implicated the Akt, BDNF (brain-derived neurotrophic factor), and ERK (extracellular signal-regulated kinase) pathways, identifying 414 drugs targeting 48 of these opioid addiction–associated genes. Some of the identified drugs are approved to treat other substance use disorders or depression. Conclusions: Our synthesis of multiomics using a systems biology approach revealed key gene targets that could contribute to drug repurposing, genetics-informed addiction treatment, and future discovery.

Original languageEnglish (US)
JournalBiological psychiatry
DOIs
StateAccepted/In press - 2025
Externally publishedYes

Keywords

  • Addiction
  • Bioinformatics
  • Multiomic
  • Networks
  • Opioids
  • Systems biology

ASJC Scopus subject areas

  • Biological Psychiatry

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