TY - JOUR
T1 - MicroRNA and metabolomics signatures for adrenomyeloneuropathy disease severity
AU - Turk, Bela Rui
AU - Poisson, Laila Marie
AU - Nemeth, Christina Linnea
AU - Goodman, Jordan
AU - Moser, Ann B.
AU - Jones, Richard Owen
AU - Fatemi, Ali
AU - Singh, Jaspreet
N1 - Publisher Copyright:
© 2022 The Authors. JIMD Reports published by John Wiley & Sons Ltd on behalf of SSIEM.
PY - 2022/11
Y1 - 2022/11
N2 - Adrenomyeloneuropathy (AMN), the slow progressive phenotype of adrenoleukodystrophy (ALD), has no clinical plasma biomarker for disease progression. This feasibility study aimed to determine whether metabolomics and micro-RNA in blood plasma provide a potential source of biomarkers for AMN disease severity. Metabolomics and RNA-seq were performed on AMN and healthy human blood plasma. Biomarker discovery and pathway analyses were performed using clustering, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis, and regression against patient's clinical Expanded Disability Status Score (EDSS). Fourteen AMN and six healthy control samples were analyzed. AMN showed strong disease-severity-specific metabolic and miRNA clustering signatures. Strong, significant clinical correlations were shown for 7-alpha-hydroxy-3-oxo-4-cholestenoate (7-HOCA) (r2 = 0.83, p < 0.00001), dehydroepiandrosterone sulfate (DHEA-S; r2 = 0.82, p < 0.00001), hypoxanthine (r2 = 0.82, p < 0.00001), as well as miRNA-432-5p (r2 = 0.68, p < 0.00001). KEGG pathway comparison of mild versus severe disease identified affected downstream systems: GAREM, IGF-1, CALCRL, SMAD2&3, glutathione peroxidase, LDH, and NOS. This feasibility study demonstrates that miRNA and metabolomics are a source of potential plasma biomarkers for disease severity in AMN, providing both a disease signature and individual markers with strong clinical correlations. Network analyses of affected systems implicate differentially altered vascular, inflammatory, and oxidative stress pathways, suggesting disease-severity-specific mechanisms as a function of disease severity.
AB - Adrenomyeloneuropathy (AMN), the slow progressive phenotype of adrenoleukodystrophy (ALD), has no clinical plasma biomarker for disease progression. This feasibility study aimed to determine whether metabolomics and micro-RNA in blood plasma provide a potential source of biomarkers for AMN disease severity. Metabolomics and RNA-seq were performed on AMN and healthy human blood plasma. Biomarker discovery and pathway analyses were performed using clustering, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis, and regression against patient's clinical Expanded Disability Status Score (EDSS). Fourteen AMN and six healthy control samples were analyzed. AMN showed strong disease-severity-specific metabolic and miRNA clustering signatures. Strong, significant clinical correlations were shown for 7-alpha-hydroxy-3-oxo-4-cholestenoate (7-HOCA) (r2 = 0.83, p < 0.00001), dehydroepiandrosterone sulfate (DHEA-S; r2 = 0.82, p < 0.00001), hypoxanthine (r2 = 0.82, p < 0.00001), as well as miRNA-432-5p (r2 = 0.68, p < 0.00001). KEGG pathway comparison of mild versus severe disease identified affected downstream systems: GAREM, IGF-1, CALCRL, SMAD2&3, glutathione peroxidase, LDH, and NOS. This feasibility study demonstrates that miRNA and metabolomics are a source of potential plasma biomarkers for disease severity in AMN, providing both a disease signature and individual markers with strong clinical correlations. Network analyses of affected systems implicate differentially altered vascular, inflammatory, and oxidative stress pathways, suggesting disease-severity-specific mechanisms as a function of disease severity.
KW - adrenoleukodystrophy
KW - adrenomyeloneuropathy
KW - biomarker
KW - leukodystrophy
KW - metabolomics
KW - micro-RNA
UR - http://www.scopus.com/inward/record.url?scp=85141708856&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85141708856&partnerID=8YFLogxK
U2 - 10.1002/jmd2.12323
DO - 10.1002/jmd2.12323
M3 - Article
C2 - 36341174
AN - SCOPUS:85141708856
SN - 2192-8304
VL - 63
SP - 593
EP - 603
JO - JIMD Reports
JF - JIMD Reports
IS - 6
ER -