Hawkeye: An interactive visual analytics tool for genome assemblies

Michael C. Schatz; Adam M. Phillippy; Ben Shneiderman; Steven L. Salzberg

doi:10.1186/gb-2007-8-3-r34

Hawkeye: An interactive visual analytics tool for genome assemblies

Michael C. Schatz, Adam M. Phillippy, Ben Shneiderman, Steven L. Salzberg

Research output: Contribution to journal › Article › peer-review

59 Scopus citations

Abstract

Genome sequencing remains an inexact science, and genome sequences can contain significant errors if they are not carefully examined. Hawkeye is our new visual analytics tool for genome assemblies, designed to aid in identifying and correcting assembly errors. Users can analyze all levels of an assembly along with summary statistics and assembly metrics, and are guided by a ranking component towards likely mis-assemblies. Hawkeye is freely available and released as part of the open source AMOS project http://amos.sourceforge.net/hawkeye.

Original language	English (US)
Article number	R34
Journal	Genome biology
Volume	8
Issue number	3
DOIs	https://doi.org/10.1186/gb-2007-8-3-r34
State	Published - Mar 9 2007
Externally published	Yes

ASJC Scopus subject areas

Ecology, Evolution, Behavior and Systematics
Genetics
Cell Biology

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10.1186/gb-2007-8-3-r34

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AU - Salzberg, Steven L.

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AB - Genome sequencing remains an inexact science, and genome sequences can contain significant errors if they are not carefully examined. Hawkeye is our new visual analytics tool for genome assemblies, designed to aid in identifying and correcting assembly errors. Users can analyze all levels of an assembly along with summary statistics and assembly metrics, and are guided by a ranking component towards likely mis-assemblies. Hawkeye is freely available and released as part of the open source AMOS project http://amos.sourceforge.net/hawkeye.

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Hawkeye: An interactive visual analytics tool for genome assemblies

Abstract

ASJC Scopus subject areas

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