Genome-wide scan for familial nasopharyngeal carcinoma reveals evidence of linkage to chromosome 4

Bing Jian Feng, Wei Huang, Yin Yao Shugart, Ming K. Lee, Feng Zhang, Jian Chuan Xia, Hui Yun Wang, Teng Bo Huang, Shao Wen Jian, Ping Huang, Qi Sheng Feng, Li Xi Huang, Xing Juan Yu, Duang Li, Li Zheng Chen, Wei Hua Jia, Yan Fang, Hui Ming Huang, Jing Liu Zhu, Xiao Ming LiuYan Zhao, Wang Qing Liu, Mang Quan Deng, Wei Han Hu, Shao Xiong Wu, Hao Yuan Mo, Ming Fang Hong, Mary Claire King, Zhu Chen, Yi Xin Zeng

Research output: Contribution to journalArticlepeer-review

206 Scopus citations


Nasopharyngeal carcinoma (NPC) occurs with high frequency in Asian populations, especially among people of Cantonese ancestry. In areas with high incidence, NPC clusters in families, which suggests that both geography and genetics may influence disease risk. Although the HLA-Bw46 locus is associated with increased risk of NPC, no predisposing genes have been identified so far. Here we report the results of a genome-wide search carried out in families at high risk of NPC from Guangdong Province, China. Parametric analyses provide evidence of linkage to the D4S405 marker on chromosome 4 with a logarithm of odds for linkage (lod) score of 3.06 and a heterogeneity-adjusted lod (hlod) score of 3.21. Fine mapping with additional markers flanking D4S405 resulted in a lod score of 3.54 and hlod score of 3.67 for the region 4p15.1-q12. Multipoint nonparametric linkage analysis gives lod scores of 3.54 at D4S405 (P = 5.4 × 10-5) and 4.2 at D4S3002 (P = 1.1 × 10-5), which is positioned 4.5 cM away from D4S405. When Epstein-Barr virus antibody titer was included as a covariate, the lod scores reached 4.70 (P = 2.0 × 10-s) and 5.36 (P = 4.36 × 10-6) for D4S405 and D4S3002, respectively. Our findings provide evidence of a major susceptibility locus for NPC on chromosome 4 in a subset of families.

Original languageEnglish (US)
Pages (from-to)395-399
Number of pages5
JournalNature Genetics
Issue number4
StatePublished - Aug 1 2002

ASJC Scopus subject areas

  • Genetics(clinical)
  • Genetics


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