Generation of Rab-based transgenic lines for in vivo studies of endosome biology in zebrafish

Brian S. Clark, Mark Winter, Andrew R. Cohen, Brian A. Link

Research output: Contribution to journalArticlepeer-review

57 Scopus citations


The Rab family of small GTPases function as molecular switches regulating membrane and protein trafficking. Individual Rab isoforms define and are required for specific endosomal compartments. To facilitate in vivo investigation of specific Rab proteins, and endosome biology in general, we have generated transgenic zebrafish lines to mark and manipulate Rab proteins. We also developed software to track and quantify endosome dynamics within time-lapse movies. The established transgenic lines ubiquitously express EGFP fusions of Rab5c (early endosomes), Rab11a (recycling endosomes), and Rab7 (late endosomes) to study localization and dynamics during development. Additionally, we generated UAS-based transgenic lines expressing constitutive active (CA) and dominant-negative (DN) versions for each of these Rab proteins. Predicted localization and functional consequences for each line were verified through a variety of assays, including lipophilic dye uptake and Crumbs2a localization. In summary, we have established a toolset for in vivo analyses of endosome dynamics and functions.

Original languageEnglish (US)
Pages (from-to)2452-2465
Number of pages14
JournalDevelopmental Dynamics
Issue number11
StatePublished - Nov 2011
Externally publishedYes


  • Endosome dynamics
  • Neuroepithelia
  • Organelle polarization
  • Zebrafish transgenic lines

ASJC Scopus subject areas

  • Developmental Biology


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