Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen

S. Chandra Nayaka; H. Shekar Shetty; C. Tara Satyavathi; Rattan S. Yadav; P. B.Kavi Kishor; M. Nagaraju; T. A. Anoop; M. Milner Kumar; Boney Kuriakose; Navajeet Chakravartty; A. V.S.K.Mohan Katta; V. B.Reddy Lachagari; Om Vir Singh; Pranav Pankaj Sahu; Swati Puranik; Pankaj Kaushal; Rakesh K. Srivastava

doi:10.1016/j.btre.2017.07.006

Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen

S. Chandra Nayaka, H. Shekar Shetty, C. Tara Satyavathi, Rattan S. Yadav, P. B.Kavi Kishor, M. Nagaraju, T. A. Anoop, M. Milner Kumar, Boney Kuriakose, Navajeet Chakravartty, A. V.S.K.Mohan Katta, V. B.Reddy Lachagari, Om Vir Singh, Pranav Pankaj Sahu, Swati Puranik, Pankaj Kaushal, Rakesh K. Srivastava

Krieger School of Arts and Sciences

Research output: Contribution to journal › Article › peer-review

8 Scopus citations

Abstract

Sclerospora graminicola pathogen is the most important biotic production constraints of pearl millet in India, Africa and other parts of the world. We report a de novo whole genome assembly and analysis of pathotype 1, one of the most virulent pathotypes of S. graminicola from India. The draft genome assembly contained 299,901,251 bp with 65,404 genes. This study may help understand the evolutionary pattern of pathogen and aid elucidation of effector evolution for devising effective durable resistance breeding strategies in pearl millet.

Original language	English (US)
Pages (from-to)	18-20
Number of pages	3
Journal	Biotechnology Reports
Volume	16
DOIs	https://doi.org/10.1016/j.btre.2017.07.006
State	Published - Dec 2017

Keywords

Downy mildew
Pathotype 1
Pearl millet
Sclerospora graminicola
Whole genome sequence

ASJC Scopus subject areas

Biotechnology
Applied Microbiology and Biotechnology

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10.1016/j.btre.2017.07.006

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Nayaka, S. C., Shetty, H. S., Satyavathi, C. T., Yadav, R. S., Kishor, P. B. K., Nagaraju, M., Anoop, T. A., Kumar, M. M., Kuriakose, B., Chakravartty, N., Katta, A. V. S. K. M., Lachagari, V. B. R., Singh, O. V., Sahu, P. P., Puranik, S., Kaushal, P., & Srivastava, R. K. (2017). Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen. Biotechnology Reports, 16, 18-20. https://doi.org/10.1016/j.btre.2017.07.006

Nayaka, SC, Shetty, HS, Satyavathi, CT, Yadav, RS, Kishor, PBK, Nagaraju, M, Anoop, TA, Kumar, MM, Kuriakose, B, Chakravartty, N, Katta, AVSKM, Lachagari, VBR, Singh, OV, Sahu, PP, Puranik, S, Kaushal, P & Srivastava, RK 2017, 'Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen', Biotechnology Reports, vol. 16, pp. 18-20. https://doi.org/10.1016/j.btre.2017.07.006

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title = "Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen",

abstract = "Sclerospora graminicola pathogen is the most important biotic production constraints of pearl millet in India, Africa and other parts of the world. We report a de novo whole genome assembly and analysis of pathotype 1, one of the most virulent pathotypes of S. graminicola from India. The draft genome assembly contained 299,901,251 bp with 65,404 genes. This study may help understand the evolutionary pattern of pathogen and aid elucidation of effector evolution for devising effective durable resistance breeding strategies in pearl millet.",

keywords = "Downy mildew, Pathotype 1, Pearl millet, Sclerospora graminicola, Whole genome sequence",

author = "Nayaka, {S. Chandra} and Shetty, {H. Shekar} and Satyavathi, {C. Tara} and Yadav, {Rattan S.} and Kishor, {P. B.Kavi} and M. Nagaraju and Anoop, {T. A.} and Kumar, {M. Milner} and Boney Kuriakose and Navajeet Chakravartty and Katta, {A. V.S.K.Mohan} and Lachagari, {V. B.Reddy} and Singh, {Om Vir} and Sahu, {Pranav Pankaj} and Swati Puranik and Pankaj Kaushal and Srivastava, {Rakesh K.}",

note = "Funding Information: The authors gratefully acknowledge the support received from the All India Coordinated Research Project on Pearl Millet ( AICRP-PM ), Mandor ; and the Indian Institute of Millets Research (IIMR) , Hyderabad in collecting and maintaining downy mildew inoculum. The financial assistance received from ICAR and AgriGenome Labs is gratefully acknowledged. The authors also acknowledge the Herbarium Cryptogamae Indiae Orientalis (HICO) , Division of Plant Pathology, Indian Agricultural Research Institute (IARI) , for undertaking conservation of the deposited fungal specimen. Publisher Copyright: {\textcopyright} 2017",

year = "2017",

month = dec,

doi = "10.1016/j.btre.2017.07.006",

language = "English (US)",

volume = "16",

pages = "18--20",

journal = "Biotechnology Reports",

issn = "2215-017X",

publisher = "Elsevier BV",

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T1 - Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen

AU - Nayaka, S. Chandra

AU - Shetty, H. Shekar

AU - Satyavathi, C. Tara

AU - Yadav, Rattan S.

AU - Kishor, P. B.Kavi

AU - Nagaraju, M.

AU - Anoop, T. A.

AU - Kumar, M. Milner

AU - Kuriakose, Boney

AU - Chakravartty, Navajeet

AU - Katta, A. V.S.K.Mohan

AU - Lachagari, V. B.Reddy

AU - Singh, Om Vir

AU - Sahu, Pranav Pankaj

AU - Puranik, Swati

AU - Kaushal, Pankaj

AU - Srivastava, Rakesh K.

N1 - Funding Information: The authors gratefully acknowledge the support received from the All India Coordinated Research Project on Pearl Millet ( AICRP-PM ), Mandor ; and the Indian Institute of Millets Research (IIMR) , Hyderabad in collecting and maintaining downy mildew inoculum. The financial assistance received from ICAR and AgriGenome Labs is gratefully acknowledged. The authors also acknowledge the Herbarium Cryptogamae Indiae Orientalis (HICO) , Division of Plant Pathology, Indian Agricultural Research Institute (IARI) , for undertaking conservation of the deposited fungal specimen. Publisher Copyright: © 2017

PY - 2017/12

Y1 - 2017/12

N2 - Sclerospora graminicola pathogen is the most important biotic production constraints of pearl millet in India, Africa and other parts of the world. We report a de novo whole genome assembly and analysis of pathotype 1, one of the most virulent pathotypes of S. graminicola from India. The draft genome assembly contained 299,901,251 bp with 65,404 genes. This study may help understand the evolutionary pattern of pathogen and aid elucidation of effector evolution for devising effective durable resistance breeding strategies in pearl millet.

AB - Sclerospora graminicola pathogen is the most important biotic production constraints of pearl millet in India, Africa and other parts of the world. We report a de novo whole genome assembly and analysis of pathotype 1, one of the most virulent pathotypes of S. graminicola from India. The draft genome assembly contained 299,901,251 bp with 65,404 genes. This study may help understand the evolutionary pattern of pathogen and aid elucidation of effector evolution for devising effective durable resistance breeding strategies in pearl millet.

KW - Downy mildew

KW - Pathotype 1

KW - Pearl millet

KW - Sclerospora graminicola

KW - Whole genome sequence

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JO - Biotechnology Reports

JF - Biotechnology Reports

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Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen

Abstract

Keywords

ASJC Scopus subject areas

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