Computer-assisted analysis of regulation of the glycerol-3-phosphate metabolism in genomes of proteobacteria

L. V. Danilova; M. S. Gelfand; V. A. Lyubetsky; O. N. Laikova

Computer-assisted analysis of regulation of the glycerol-3-phosphate metabolism in genomes of proteobacteria

L. V. Danilova, M. S. Gelfand, V. A. Lyubetsky, O. N. Laikova

Research output: Contribution to journal › Article › peer-review

Abstract

Comparative computer-assisted analysis was used to study putative GlpR-regulons responsible for metabolism of glycerol and glycerol-3-phosphate in genomes of α-, β-, and γ-proteobacteria. New palindromic GlpR-binding signals were identified in γ-proteobacteria; consensus sequences being TGTTCGATAACGAACA for Enterobacteriaceae, wTTTTCGTATACGAAAAw for Pseudomonadaceae, and AATGCTCGATCGAGCATT for Vibrionaceae. The signals in α- and β-proteobacteria were also identified: they contained 3-4 direct TTTCGTT repeats separated by 3-4 nucleotide pairs.

Original language	English (US)
Pages (from-to)	843-849
Number of pages	7
Journal	Molekulyarnaya Biologiya
Volume	37
Issue number	5
State	Published - Dec 1 2003
Externally published	Yes

ASJC Scopus subject areas

General Medicine

Cite this

@article{6d4d7d42440143caa07204d7944e89d9,

title = "Computer-assisted analysis of regulation of the glycerol-3-phosphate metabolism in genomes of proteobacteria",

abstract = "Comparative computer-assisted analysis was used to study putative GlpR-regulons responsible for metabolism of glycerol and glycerol-3-phosphate in genomes of α-, β-, and γ-proteobacteria. New palindromic GlpR-binding signals were identified in γ-proteobacteria; consensus sequences being TGTTCGATAACGAACA for Enterobacteriaceae, wTTTTCGTATACGAAAAw for Pseudomonadaceae, and AATGCTCGATCGAGCATT for Vibrionaceae. The signals in α- and β-proteobacteria were also identified: they contained 3-4 direct TTTCGTT repeats separated by 3-4 nucleotide pairs.",

author = "Danilova, {L. V.} and Gelfand, {M. S.} and Lyubetsky, {V. A.} and Laikova, {O. N.}",

year = "2003",

month = dec,

day = "1",

language = "English (US)",

volume = "37",

pages = "843--849",

journal = "Molekulyarnaya Biologiya",

issn = "0026-8984",

publisher = "Russian Academy of Sciences",

number = "5",

}

TY - JOUR

T1 - Computer-assisted analysis of regulation of the glycerol-3-phosphate metabolism in genomes of proteobacteria

AU - Danilova, L. V.

AU - Gelfand, M. S.

AU - Lyubetsky, V. A.

AU - Laikova, O. N.

PY - 2003/12/1

Y1 - 2003/12/1

N2 - Comparative computer-assisted analysis was used to study putative GlpR-regulons responsible for metabolism of glycerol and glycerol-3-phosphate in genomes of α-, β-, and γ-proteobacteria. New palindromic GlpR-binding signals were identified in γ-proteobacteria; consensus sequences being TGTTCGATAACGAACA for Enterobacteriaceae, wTTTTCGTATACGAAAAw for Pseudomonadaceae, and AATGCTCGATCGAGCATT for Vibrionaceae. The signals in α- and β-proteobacteria were also identified: they contained 3-4 direct TTTCGTT repeats separated by 3-4 nucleotide pairs.

AB - Comparative computer-assisted analysis was used to study putative GlpR-regulons responsible for metabolism of glycerol and glycerol-3-phosphate in genomes of α-, β-, and γ-proteobacteria. New palindromic GlpR-binding signals were identified in γ-proteobacteria; consensus sequences being TGTTCGATAACGAACA for Enterobacteriaceae, wTTTTCGTATACGAAAAw for Pseudomonadaceae, and AATGCTCGATCGAGCATT for Vibrionaceae. The signals in α- and β-proteobacteria were also identified: they contained 3-4 direct TTTCGTT repeats separated by 3-4 nucleotide pairs.

UR - http://www.scopus.com/inward/record.url?scp=1542706154&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=1542706154&partnerID=8YFLogxK

M3 - Article

C2 - 14593921

AN - SCOPUS:1542706154

SN - 0026-8984

VL - 37

SP - 843

EP - 849

JO - Molekulyarnaya Biologiya

JF - Molekulyarnaya Biologiya

IS - 5

ER -

Computer-assisted analysis of regulation of the glycerol-3-phosphate metabolism in genomes of proteobacteria

Abstract

ASJC Scopus subject areas

Other files and links

Fingerprint

Cite this