An effective interwoven loop design application for two-channel microarray experiments

Mehdi Pirooznia; Arun Rawat; Jack Y. Yang; Mary Qu Yang; Ping Gong; Edward J. Perkins; Youping Deng

doi:10.1109/BIBE.2007.4375563

An effective interwoven loop design application for two-channel microarray experiments

Mehdi Pirooznia, Arun Rawat, Jack Y. Yang, Mary Qu Yang, Ping Gong, Edward J. Perkins, Youping Deng

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Abstract

Microarray technology is widely applied to address complex scientific questions. However, there remain fundamental issues of how to design experiments to ensure that the resulting data enables robust statistical analysis. Interwoven loop design has several advantages over other designs. However it suffers in the complexity of design. We have implemented an online web application which allows users to find optimal loop designs for two-color microarray experiments. Given a number of conditions (such as treatments or time points) and replicates, the application will find the best possible design of the experiment and output experimental parameters. It is freely available from http://mcbc.usm.edu/iloop.

Original language	English (US)
Title of host publication	Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE
Pages	187-191
Number of pages	5
DOIs	https://doi.org/10.1109/BIBE.2007.4375563
State	Published - 2007
Externally published	Yes
Event	7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE - Boston, MA, United States Duration: Jan 14 2007 → Jan 17 2007

Other

Other	7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE
Country/Territory	United States
City	Boston, MA
Period	1/14/07 → 1/17/07

Keywords

Experiment design
Interwoven loop design
Microarray

ASJC Scopus subject areas

Biotechnology
Genetics
Bioengineering

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10.1109/BIBE.2007.4375563

Cite this

Pirooznia, M, Rawat, A, Yang, JY, Yang, MQ, Gong, P, Perkins, EJ & Deng, Y 2007, An effective interwoven loop design application for two-channel microarray experiments. in Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE., 4375563, pp. 187-191, 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE, Boston, MA, United States, 1/14/07. https://doi.org/10.1109/BIBE.2007.4375563

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abstract = "Microarray technology is widely applied to address complex scientific questions. However, there remain fundamental issues of how to design experiments to ensure that the resulting data enables robust statistical analysis. Interwoven loop design has several advantages over other designs. However it suffers in the complexity of design. We have implemented an online web application which allows users to find optimal loop designs for two-color microarray experiments. Given a number of conditions (such as treatments or time points) and replicates, the application will find the best possible design of the experiment and output experimental parameters. It is freely available from http://mcbc.usm.edu/iloop.",

keywords = "Experiment design, Interwoven loop design, Microarray",

author = "Mehdi Pirooznia and Arun Rawat and Yang, {Jack Y.} and Yang, {Mary Qu} and Ping Gong and Perkins, {Edward J.} and Youping Deng",

year = "2007",

doi = "10.1109/BIBE.2007.4375563",

language = "English (US)",

isbn = "1424415098",

pages = "187--191",

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T1 - An effective interwoven loop design application for two-channel microarray experiments

AU - Pirooznia, Mehdi

AU - Rawat, Arun

AU - Yang, Jack Y.

AU - Yang, Mary Qu

AU - Gong, Ping

AU - Perkins, Edward J.

AU - Deng, Youping

PY - 2007

Y1 - 2007

N2 - Microarray technology is widely applied to address complex scientific questions. However, there remain fundamental issues of how to design experiments to ensure that the resulting data enables robust statistical analysis. Interwoven loop design has several advantages over other designs. However it suffers in the complexity of design. We have implemented an online web application which allows users to find optimal loop designs for two-color microarray experiments. Given a number of conditions (such as treatments or time points) and replicates, the application will find the best possible design of the experiment and output experimental parameters. It is freely available from http://mcbc.usm.edu/iloop.

AB - Microarray technology is widely applied to address complex scientific questions. However, there remain fundamental issues of how to design experiments to ensure that the resulting data enables robust statistical analysis. Interwoven loop design has several advantages over other designs. However it suffers in the complexity of design. We have implemented an online web application which allows users to find optimal loop designs for two-color microarray experiments. Given a number of conditions (such as treatments or time points) and replicates, the application will find the best possible design of the experiment and output experimental parameters. It is freely available from http://mcbc.usm.edu/iloop.

KW - Experiment design

KW - Interwoven loop design

KW - Microarray

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BT - Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE

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ER -

An effective interwoven loop design application for two-channel microarray experiments

Abstract

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Keywords

ASJC Scopus subject areas

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