Algorithms for whole genome analysis

Steven L. Salzberg

Algorithms for whole genome analysis

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Abstract

The MUMmer, a system for aligning whole genome sequences, and improvements in the Glimmer bacterial gene finding system are discussed. Its use will be demonstrated on several pairs of strains of bacteria, ranging from very highly homologous organisms to much more distantly related organisms. This paper presents a new eukaryotic gene-finding system based on IMMs, GlimmerM, is developed for the genome of the malaria parasite, and is trained for the Arabidopsis thaliana and rice genomes.

Original language	English (US)
Title of host publication	Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, CBGIST 2001
Editors	C.H. Wu, P.P. Wang, J.T.L. Wang
Number of pages	1
State	Published - Dec 1 2001
Externally published	Yes
Event	Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, GBGIST 2001 - Durham, NC, United States Duration: Mar 15 2001 → Mar 17 2001

Publication series

Name	Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technolgoy, CBGIST 2001

Other

Other	Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, GBGIST 2001
Country/Territory	United States
City	Durham, NC
Period	3/15/01 → 3/17/01

ASJC Scopus subject areas

Agricultural and Biological Sciences (miscellaneous)
Genetics
Computer Science (miscellaneous)

Cite this

Algorithms for whole genome analysis. / Salzberg, Steven L.
Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, CBGIST 2001. ed. / C.H. Wu; P.P. Wang; J.T.L. Wang. 2001. (Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technolgoy, CBGIST 2001).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Salzberg, SL 2001, Algorithms for whole genome analysis. in CH Wu, PP Wang & JTL Wang (eds), Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, CBGIST 2001. Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technolgoy, CBGIST 2001, Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, GBGIST 2001, Durham, NC, United States, 3/15/01.

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T3 - Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technolgoy, CBGIST 2001

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ER -

Algorithms for whole genome analysis

Abstract

Publication series

Other

ASJC Scopus subject areas

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