A Multi-scale Spatial and Temporal Attention Network on Dynamic Connectivity to Localize the Eloquent Cortex in Brain Tumor Patients

Naresh Nandakumar, Komal Manzoor, Shruti Agarwal, Jay J. Pillai, Sachin K. Gujar, Haris I. Sair, Archana Venkataraman

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

We present a deep neural network architecture that combines multi-scale spatial attention with temporal attention to simultaneously localize the language and motor areas of the eloquent cortex from dynamic functional connectivity data. Our multi-scale spatial attention operates on graph-based features extracted from the connectivity matrices, thus honing in on the inter-regional interactions that collectively define the eloquent cortex. At the same time, our temporal attention model selects the intervals during which these interactions are most pronounced. The final stage of our model employs multi-task learning to differentiate between the eloquent subsystems. Our training strategy enables us to handle missing eloquent class labels by freezing the weights in those branches while updating the rest of the network weights. We evaluate our method on resting-state fMRI data from one synthetic dataset and one in-house brain tumor dataset while using task fMRI activations as ground-truth labels for the eloquent cortex. Our model achieves higher localization accuracies than conventional deep learning approaches. It also produces interpretable spatial and temporal attention features which can provide further insights for presurgical planning. Thus, our model shows translational promise for improving the safety of brain tumor resections.

Original languageEnglish (US)
Title of host publicationInformation Processing in Medical Imaging - 27th International Conference, IPMI 2021, Proceedings
EditorsAasa Feragen, Stefan Sommer, Julia Schnabel, Mads Nielsen
PublisherSpringer Science and Business Media Deutschland GmbH
Pages241-252
Number of pages12
ISBN (Print)9783030781903
DOIs
StatePublished - 2021
Event27th International Conference on Information Processing in Medical Imaging, IPMI 2021 - Virtual, Online
Duration: Jun 28 2021Jun 30 2021

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume12729 LNCS
ISSN (Print)0302-9743
ISSN (Electronic)1611-3349

Conference

Conference27th International Conference on Information Processing in Medical Imaging, IPMI 2021
CityVirtual, Online
Period6/28/216/30/21

Keywords

  • Brain Tumor rs-fMRI
  • CNN
  • Eloquent cortex localization

ASJC Scopus subject areas

  • Theoretical Computer Science
  • General Computer Science

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