A deep generative prior for high-resolution isotropic MR head slices

Samuel W. Remedios, Blake E. Dewey, Aaron Carass, Dzung Pham, Jerry L. Prince

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

Generative priors for magnetic resonance (MR) images have been used in a number of medical image analysis applications. Due to the plethora of deep learning methods based on 2D medical images, it would be beneficial to have a generator trained on complete, high-resolution 2D head MR slices from multiple orientations and multiple contrasts. In this work, we trained a StyleGAN3-T model for head MR slices for T1 and T2-weighted contrasts on public data. We restricted the training corpus of this model to slices from 1mm isotropic volumes corresponding to three standard radiological views with set pre-processing steps. In order to retain full applicability to downstream tasks, we did not skull-strip the images. Several analyses of the trained network, including examination of qualitative samples, interpolation of latent codes, and style mixing, demonstrate the expressivity of the network. Images from this network can be used for a variety of downstream tasks. The weights are open-sourced and are available at https://gitlab.com/iacl/high-res-mri-head-slice-gan.

Original languageEnglish (US)
Title of host publicationMedical Imaging 2023
Subtitle of host publicationImage Processing
EditorsOlivier Colliot, Ivana Isgum
PublisherSPIE
ISBN (Electronic)9781510660335
DOIs
StatePublished - 2023
EventMedical Imaging 2023: Image Processing - San Diego, United States
Duration: Feb 19 2023Feb 23 2023

Publication series

NameProgress in Biomedical Optics and Imaging - Proceedings of SPIE
Volume12464
ISSN (Print)1605-7422

Conference

ConferenceMedical Imaging 2023: Image Processing
Country/TerritoryUnited States
CitySan Diego
Period2/19/232/23/23

Keywords

  • GAN
  • MRI
  • StyleGAN3
  • T
  • T
  • brain
  • generative prior
  • high-resolution
  • isotropic

ASJC Scopus subject areas

  • Electronic, Optical and Magnetic Materials
  • Atomic and Molecular Physics, and Optics
  • Biomaterials
  • Radiology Nuclear Medicine and imaging

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