Research output per year
Research output per year
- 1 - 50 out of 96 results
Search results
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2023
A diagnostic stewardship approach to prevent unnecessary testing of an enteric bacterial molecular panel
Campodónico, V. L., Hanlon, A., Mikula, M. W., Miller, J. A., Gherna, M., Carroll, K. C. & Simner, P. J., Dec 2023, In: Microbiology Spectrum. 11, 6Research output: Contribution to journal › Article › peer-review
Open Access -
An NDM-Producing Escherichia coli Clinical Isolate Exhibiting Resistance to Cefiderocol and the Combination of Ceftazidime-Avibactam and Aztreonam: Another Step Toward Pan-β-Lactam Resistance
Simner, P. J., Bergman, Y., Conzemius, R., Jacobs, E., Tekle, T., Beisken, S. & Tamma, P. D., Jul 1 2023, In: Open Forum Infectious Diseases. 10, 7, ofad276.Research output: Contribution to journal › Article › peer-review
Open Access -
Cefepime in vivo activity against carbapenem-resistant Enterobacterales that test as cefepime susceptible or susceptible-dose dependent in vitro: implications for clinical microbiology laboratory and clinicians
Fouad, A., Gill, C. M., Simner, P. J., Nicolau, D. P. & Asempa, T. E., Sep 1 2023, In: Journal of Antimicrobial Chemotherapy. 78, 9, p. 2242-2253 12 p.Research output: Contribution to journal › Article › peer-review
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Cefiderocol Treatment for Patients with Multidrug- and Carbapenem-Resistant Pseudomonas aeruginosa Infections in the Compassionate Use Program
Satlin, M. J., Simner, P. J., Slover, C. M., Yamano, Y., Nagata, T. D. & Portsmouth, S., Jul 2023, In: Antimicrobial agents and chemotherapy. 67, 7Research output: Contribution to journal › Article › peer-review
Open Access -
Clinical significance of Nosocomiicoccus ampullae isolated from blood cultures
Campodónico, V. L., Tekle, T., Bergman, Y., Lu, J., Gisriel, E., Romagnoli, M., Bourdas, D., Hanlon, A., Manuel, C., Humphries, R., Simner, P. J. & Carroll, K. C., Dec 2023, In: Microbiology Spectrum. 11, 6Research output: Contribution to journal › Article › peer-review
Open Access -
Comparing the activity of novel antibiotic agents against carbapenem-resistant Enterobacterales clinical isolates
Tamma, P. D., Bergman, Y., Jacobs, E. B., Lee, J. H., Lewis, S., Cosgrove, S. E. & Simner, P. J., May 13 2023, In: Infection control and hospital epidemiology. 44, 5, p. 762-767 6 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Evaluation of Piperacillin-Tazobactam Testing against Enterobacterales by the Phoenix, MicroScan, and Vitek2 Tests Using Updated Clinical and Laboratory Standards Institute Breakpoints
Manuel, C., Maynard, R., Abbott, A., Adams, K., Alby, K., Sweeney, A., Bard, J. D., Flores, I. I., Rekasius, V., Harrington, A., Kidd, T. S., Mathers, A. J., Tekle, T., Simner, P. J. & Humphries, R. M., Feb 2023, In: Journal of clinical microbiology. 61, 2Research output: Contribution to journal › Article › peer-review
Open Access -
Guiding antimicrobial stewardship through thoughtful antimicrobial susceptibility testing and reporting strategies: an updated approach in 2023
Pierce, V. M., Bhowmick, T. & Simner, P. J., 2023, In: Journal of clinical microbiology. 61, 11, e00074-22.Research output: Contribution to journal › Article › peer-review
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Modelling interventions and contact networks to reduce the spread of carbapenem-resistant organisms between individuals in the ICU
Martínez, D. A., Cai, J., Lin, G., Goodman, K. E., Paul, R., Lessler, J., Levin, S. R., Toerper, M., Simner, P. J., Milstone, A. M. & Klein, E. Y., Jun 2023, In: Journal of Hospital Infection. 136, p. 1-7 7 p.Research output: Contribution to journal › Article › peer-review
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Multicenter Evaluation of an MIC-Based Aztreonam and Ceftazidime-Avibactam Broth Disk Elution Test
Harris, H., Tao, L., Jacobs, E. B., Bergman, Y., Adebayo, A., Tekle, T., Lewis, S., Dahlquist, A., Abbey, T. C., Wenzler, E., Humphries, R. & Simner, P. J., May 2023, In: Journal of clinical microbiology. 61, 5Research output: Contribution to journal › Article › peer-review
Open Access -
Multicentre genetic diversity study of carbapenem-resistant Enterobacterales: predominance of untypeable pUVA-like blaKPC bearing plasmids
Simner, P. J., Bergman, Y., Fan, Y., Jacobs, E. B., Ramakrishnan, S., Lu, J., Lewis, S., Hanlon, A., Tamma, P. D., Schatz, M. C., Timp, W. & Carroll, K. C., Jun 1 2023, In: JAC-Antimicrobial Resistance. 5, 3, dlad061.Research output: Contribution to journal › Article › peer-review
Open Access -
Priorities and Progress in Diagnostic Research by the Antibacterial Resistance Leadership Group
Hanson, K. E., Banerjee, R., Doernberg, S. B., Evans, S. R., Komarow, L., Satlin, M. J., Schwager, N., Simner, P. J., Tillekeratne, L. G. & Patel, R., Oct 15 2023, In: Clinical Infectious Diseases. 77, p. S314-S320Research output: Contribution to journal › Article › peer-review
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Successful Treatment of Persistent Stenotrophomonas maltophilia Bacteremia With Cefiderocol in an Infant
Hsu, A. J., Simner, P. J., Bergman, Y., Mathers, A. J. & Tamma, P. D., Apr 1 2023, In: Open Forum Infectious Diseases. 10, 4, ofad174.Research output: Contribution to journal › Article › peer-review
Open Access -
Validation and Application of Long-Read Whole-Genome Sequencing for Antimicrobial Resistance Gene Detection and Antimicrobial Susceptibility Testing
Weinmaier, T., Conzemius, R., Bergman, Y., Lewis, S., Jacobs, E. B., Tamma, P. D., Materna, A., Weinberger, J., Beisken, S. & Simner, P. J., Jan 2023, In: Antimicrobial agents and chemotherapy. 67, 1Research output: Contribution to journal › Article › peer-review
Open Access -
2022
A consensus conference to define the utility of advanced infectious disease diagnostics in solid organ transplant recipients
Transplant ID Diagnostics Consensus Conference Working Group, Dec 2022, In: American Journal of Transplantation. 22, 12, p. 3150-3169 20 p.Research output: Contribution to journal › Article › peer-review
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Automated antimicrobial susceptibility testing and antimicrobial resistance genotyping using Illumina and Oxford Nanopore Technologies sequencing data among Enterobacteriaceae
Conzemius, R., Bergman, Y., Májek, P., Beisken, S., Lewis, S., Jacobs, E. B., Tamma, P. D. & Simner, P. J., Aug 8 2022, In: Frontiers in Microbiology. 13, 973605.Research output: Contribution to journal › Article › peer-review
Open Access -
Case Report and Genomic Analysis of Cefiderocol-Resistant Escherichia coli Clinical Isolates
Price, T. K., Davar, K., Contreras, D., Ward, K. W., Garner, O. B., Simner, P. J., Yang, S. & Chandrasekaran, S., Feb 1 2022, In: American journal of clinical pathology. 157, 2, p. 257-265 9 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Combination of phage therapy and cefiderocol to successfully treat Pseudomonas aeruginosa cranial osteomyelitis
Simner, P. J., Cherian, J., Suh, G. A., Bergman, Y., Beisken, S., Fackler, J., Lee, M., Hopkins, R. J. & Tamma, P. D., Jun 1 2022, In: JAC-Antimicrobial Resistance. 4, 3, dlac046.Research output: Contribution to journal › Article › peer-review
Open Access -
Combined comparative genomics and clinical modeling reveals plasmid-encoded genes are independently associated with Klebsiella infection
Vornhagen, J., Roberts, E. K., Unverdorben, L., Mason, S., Patel, A., Crawford, R., Holmes, C. L., Sun, Y., Teodorescu, A., Snitkin, E. S., Zhao, L., Simner, P. J., Tamma, P. D., Rao, K., Kaye, K. S. & Bachman, M. A., Dec 2022, In: Nature communications. 13, 1, 4459.Research output: Contribution to journal › Article › peer-review
Open Access -
Defining Baseline Mechanisms of Cefiderocol Resistance in the Enterobacterales
Simner, P. J., Beisken, S., Bergman, Y., Ante, M., Posch, A. E. & Tamma, P. D., Feb 2022, In: Microbial Drug Resistance. 28, 2, p. 161-170 10 p.Research output: Contribution to journal › Article › peer-review
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Evaluation of Metagenomic and Targeted Next-Generation Sequencing Workflows for Detection of Respiratory Pathogens from Bronchoalveolar Lavage Fluid Specimens
Gaston, D. C., Miller, H. B., Fissel, J. A., Jacobs, E., Gough, E., Wu, J., Klein, E. Y., Carroll, K. C. & Simner, P. J., Jul 2022, In: Journal of clinical microbiology. 60, 7Research output: Contribution to journal › Article › peer-review
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Human Colon Cancer–Derived Clostridioides difficile Strains Drive Colonic Tumorigenesis in Mice
Drewes, J. L., Chen, J., Markham, N. O., Knippel, R. J., Domingue, J. C., Tam, A. J., Chan, J. L., Kim, L., McMann, M., Stevens, C., Dejea, C. M., Tomkovich, S., Michel, J., White, J. R., Mohammad, F., Campodónico, V. L., Heiser, C. N., Wu, X., Wu, S., Ding, H., & 11 others, Aug 1 2022, In: Cancer discovery. 12, 8, p. 1873-1885 13 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Increasing Pediatric Infectious Diseases Consultation Rates for Staphylococcus aureus Bacteremia
Gordon, O., Akindele, N. P., Schumacher, C., Hanlon, A., Simner, P. J., Carroll, K. C. & Sick-Samuels, A. C., May 1 2022, In: Pediatric Quality and Safety. 7, 3, p. E560Research output: Contribution to journal › Article › peer-review
Open Access -
Multicenter Evaluation of the Acuitas AMR Gene Panel for Detection of an Extended Panel of Antimicrobial Resistance Genes among Bacterial Isolates
Simner, P. J., Musser, K. A., Mitchell, K., Wise, M. G., Lewis, S., Yee, R., Bergman, Y., Good, C. E., Abdelhamed, A. M., Li, H., Laseman, E. M., Sahm, D., Pitzer, K., Quan, J., Walker, G. T., Jacobs, M. R. & Rhoads, D. D., Mar 2022, In: Journal of clinical microbiology. 60, 3, e02098-21.Research output: Contribution to journal › Article › peer-review
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Phage display of environmental protein toxins and virulence factors reveals the prevalence, persistence, and genetics of antibody responses
Angkeow, J. W., Monaco, D. R., Chen, A., Venkataraman, T., Jayaraman, S., Valencia, C., Sie, B. M., Liechti, T., Farhadi, P. N., Funez-dePagnier, G., Sherman-Baust, C. A., Wong, M. Q., Ruczinski, I., Caturegli, P., Sears, C. L., Simner, P. J., Round, J. L., Duggal, P., Laserson, U., Steiner, T. S., & 7 others, Jun 14 2022, In: Immunity. 55, 6, p. 1051-1066.e4Research output: Contribution to journal › Article › peer-review
Open Access -
Progressive Development of Cefiderocol Resistance in Escherichia coli during Therapy is Associated with an Increase in blaNDM-5Copy Number and Gene Expression
Simner, P. J., Mostafa, H. H., Bergman, Y., Ante, M., Tekle, T., Adebayo, A., Beisken, S., Dzintars, K. & Tamma, P. D., Jul 1 2022, In: Clinical Infectious Diseases. 75, 1, p. 47-54 8 p.Research output: Contribution to journal › Article › peer-review
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Progress Report: Next-Generation Sequencing, Multiplex Polymerase Chain Reaction, and Broad-Range Molecular Assays as Diagnostic Tools for Fever of Unknown Origin Investigations in Adults
Wright, W. F., Simner, P. J., Carroll, K. C. & Auwaerter, P. G., Mar 1 2022, In: Clinical Infectious Diseases. 74, 5, p. 924-932 9 p.Research output: Contribution to journal › Article › peer-review
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Raising the Bar: Improving Antimicrobial Resistance Detection by Clinical Laboratories by Ensuring Use of Current Breakpoints
Simner, P. J., Rauch, C. A., Martin, I. W., Sullivan, K. V., Rhoads, D., Rolf, R., She, R., Souers, R. J., Wojewoda, C. & Humphries, R. M., Mar 1 2022, In: Open Forum Infectious Diseases. 9, 3, ofac007.Research output: Contribution to journal › Article › peer-review
Open Access -
Rapid identification from rectal swabs of the clinically most relevant carbapenemase genes from gram-negative bacteria using the BD MAX Check-Points CPO Assay
García-Fernández, S., Simner, P. J., Thomson, G., Faron, M., Bosboom, R., van Griethuijsen, A., García-Castillo, M., Harris, R., Ledeboer, N. A., Cantón, R. & Thomson, K. S., Jan 2022, In: Diagnostic Microbiology and Infectious Disease. 102, 1, 115554.Research output: Contribution to journal › Article › peer-review
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The Brief Case: The Fly Who Cried Wohlf
Ahmad, Y., Gaston, D. C., Gray, J., Zhong, D., Gudenkauf, B., Bourdas, D., Ray, S. C. & Simner, P. J., Jun 2022, In: Journal of clinical microbiology. 60, 6Research output: Contribution to journal › Article › peer-review
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The Human "Contaminome" and Understanding Infectious Disease
Simner, P. J. & Salzberg, S. L., Sep 8 2022, In: New England Journal of Medicine. 387, 10, p. 943-946 4 p.Research output: Contribution to journal › Article › peer-review
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2021
A plasmid locus associated with Klebsiella clinical infections encodes a microbiomedependent gut fitness factor
Vornhagen, J., Bassis, C. M., Ramakrishnan, S., Hein, R., Mason, S., Bergman, Y., Sunshine, N., Fan, Y., Holmes, C. L., Timp, W., Schatz, M. C., Young, V. B., Simner, P. J. & Bachman, M. A., Apr 30 2021, In: PLoS pathogens. 17, 4, e1009537.Research output: Contribution to journal › Article › peer-review
Open Access -
Cefiderocol Activity against Clinical Pseudomonas aeruginosa Isolates Exhibiting Ceftolozane-Tazobactam Resistance
Simner, P. J., Beisken, S., Bergman, Y., Posch, A. E., Cosgrove, S. E. & Tamma, P. D., Jul 2021, In: Open Forum Infectious Diseases. 8, 7, ofab311.Research output: Contribution to journal › Article › peer-review
Open Access -
Combined selective culture and molecular methods for the detection of carbapenem-resistant organisms from fecal specimens
Yee, R., Fisher, S., Bergman, Y., Chambers, K. K., Tamma, P. D., Carroll, K. C. & Simner, P. J., Nov 2021, In: European Journal of Clinical Microbiology and Infectious Diseases. 40, 11, p. 2315-2321 7 p.Research output: Contribution to journal › Article › peer-review
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Guillain-Barré Syndrome Outbreak in Peru 2019 Associated with Campylobacter jejuni Infection
Ramos, A. P., Leonhard, S. E., Halstead, S. K., Cuba, M. A., Castañeda, C. C., Dioses, J. A., Tipismana, M. A., Abanto, J. T., Llanos, A., Gourlay, D., Grogl, M., Ramos, M., Rojas, J. D., Meza, R., Puiu, D., Sherman, R. M., Salzberg, S. L., Simner, P. J., Willison, H. J., Jacobs, B. C., & 3 others, Mar 5 2021, In: Neurology: Neuroimmunology and NeuroInflammation. 8, 2, e952.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Metagenomic next-generation sequencing of rectal swabs for the surveillance of antimicrobial-resistant organisms on the Illumina Miseq and Oxford MinION platforms
Yee, R., Breitwieser, F. P., Hao, S., Opene, B. N. A., Workman, R. E., Tamma, P. D., Dien-Bard, J., Timp, W. & Simner, P. J., Jan 2021, In: European Journal of Clinical Microbiology and Infectious Diseases. 40, 1, p. 95-102 8 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Modifiable Risk Factors for the Emergence of Ceftolozane-tazobactam Resistance
Tamma, P. D., Beisken, S., Bergman, Y., Posch, A. E., Avdic, E., Sharara, S. L., Cosgrove, S. E. & Simner, P. J., Dec 1 2021, In: Clinical Infectious Diseases. 73, 11, p. E4599-E4606Research output: Contribution to journal › Article › peer-review
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Pan-drug resistant Providencia rettgeri contributing to a fatal case of COVID-19
McGann, P. M., Geringer, M. R., Hall, L. R., Lebreton, F., Markelz, E., Kwak, Y. I., Johnson, S., Ong, A. C., Powell, A., Tekle, T., Bergman, Y., Simner, P. J., Bennett, J. W., Cybulski, R. J. & White, B. K., 2021, In: Journal of medical microbiology. 70, 8, 001406.Research output: Contribution to journal › Article › peer-review
Open Access -
Performance Evaluation of the BD SARS-CoV-2 Reagents for the BD MAX System
Yanson, K., Laviers, W., Neely, L., Lockamy, E., Castillo-Hernandez, L. C., Oldfied, C., Ackerman, R., Ackerman, J., Ortiz, D. A., Pacheco, S., Simner, P. J., Young, S., McElvania, E. & Cooper, C. K., Dec 2021, In: Journal of clinical microbiology. 59, 12, e01019-21.Research output: Contribution to journal › Article › peer-review
Open Access -
Prevalence of blaCTX-M genes in gram-negative bloodstream isolates across 66 hospitals in the United States
Tamma, P. D., Smith, T. T., Adebayo, A., Karaba, S. M., Jacobs, E., Wakefield, T., Nguyen, K., Whitfield, N. N. & Simner, P. J., Jun 2021, In: Journal of clinical microbiology. 59, 6, e00127-21.Research output: Contribution to journal › Article › peer-review
Open Access -
2020
Cefiderocol Antimicrobial Susceptibility Testing against Multidrug-Resistant Gram-Negative Bacilli: a Comparison of Disk Diffusion to Broth Microdilution
Morris, C. P., Bergman, Y., Tekle, T., Fissel, J. A., Tamma, P. D. & Simner, P. J., Dec 17 2020, In: Journal of clinical microbiology. 59, 1Research output: Contribution to journal › Article › peer-review
3 Scopus citations -
Comparing the analytical performance of three SARS-CoV-2 molecular diagnostic assays
Uhteg, K., Jarrett, J., Richards, M., Howard, C., Morehead, E., Geahr, M., Gluck, L., Hanlon, A., Ellis, B., Kaur, H., Simner, P., Carroll, K. C. & Mostafa, H. H., Jun 2020, In: Journal of Clinical Virology. 127, 104384.Research output: Contribution to journal › Article › peer-review
Open Access45 Scopus citations -
Evaluation of calcium-enhanced media for colistin susceptibility testing by gradient agar diffusion and broth microdilution
Green, D. A., MacEsic, N., Uhlemann, A. C., Lopez, M., Stump, S., Whittier, S., Schuetz, A. N., Simner, P. J. & Humphriesf, R. M., 2020, In: Journal of clinical microbiology. 58, 2, e01522-19.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
Evaluation of ng-test carba 5 for rapid phenotypic detection and differentiation of five common carbapenemase families: results of a multicenter clinical evaluation
Jenkins, S., Ledeboer, N. A., Westblade, L. F., Burnham, C. A. D., Faron, M. L., Bergman, Y., Yee, R., Mesich, B., Gerstbrein, D., Wallace, M. A., Robertson, A., Fauntleroy, K. A., Klavins, A. S., Malherbe, R., Hsiung, A. & Simner, P. J., Jul 2020, In: Journal of clinical microbiology. 58, 7, e00344-20.Research output: Contribution to journal › Article › peer-review
4 Scopus citations -
Evaluation of the NG-test mcr-1 lateral flow assay and EDTA-colistin broth disk elution methods to detect plasmid-mediated colistin resistance among Gram-negative bacterial isolates
Fenwick, A. J., Bergman, Y., Lewis, S., Yee, R., Uhlemann, A. C., Cole, N., Kohner, P., Ordak, C., Green, D. A., Schuetz, A. N., Humphries, R. & Simner, P. J., 2020, In: Journal of clinical microbiology. 58, 4, e01823-19.Research output: Contribution to journal › Article › peer-review
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Is Piperacillin-Tazobactam Effective for the Treatment of Pyelonephritis Caused by Extended-Spectrum β-Lactamase-Producing Organisms?
Sharara, S. L., Amoah, J., Pana, Z. D., Simner, P. J., Cosgrove, S. E. & Tamma, P. D., Oct 15 2020, In: Clinical Infectious Diseases. 71, 8, p. E331-E337Research output: Contribution to journal › Article › peer-review
4 Scopus citations -
Metagenomic next-generation sequencing of nasopharyngeal specimens collected from confirmed and suspect covid-19 patients
Mostafa, H. H., Fissel, J. A., Fanelli, B., Bergman, Y., Gniazdowski, V., Dadlani, M., Carroll, K. C., Colwell, R. R. & Simner, P. J., Nov 1 2020, In: mBio. 11, 6, p. 1-13 13 p., e01969-20.Research output: Contribution to journal › Article › peer-review
Open Access8 Scopus citations -
2019
A novel phenotypic method to screen for plasmid-mediated colistin resistance among enterobacteriales
Bell, D. T., Bergman, Y., Kazmi, A. Q., Lewis, S., Tamma, P. D. & Simner, P. J., May 2019, In: Journal of clinical microbiology. 57, 5, e00040-19.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
Applying rapid whole-genome sequencing to predict phenotypic antimicrobial susceptibility testing results among carbapenem-resistant klebsiella pneumoniae clinical isolates
Tamma, P. D., Fan, Y., Bergman, Y., Pertea, G., Kazmi, A. Q., Lewis, S., Carroll, K. C., Schatz, M. C., Timp, W. & Simner, P. J., Jan 2019, In: Antimicrobial agents and chemotherapy. 63, 1, e01923-18.Research output: Contribution to journal › Article › peer-review
Open Access23 Scopus citations -
EDTA-modified carbapenem inactivation method: A phenotypic method for detecting metallo-β-lactamase-producing enterobacteriaceae
Sfeir, M. M., Hayden, J. A., Fauntleroy, K. A., Mazur, C., Johnson, J. K., Simner, P. J., Das, S., Satlin, M. J., Jenkins, S. G. & Westblade, L. F., May 2019, In: Journal of clinical microbiology. 57, 5, e01757-18.Research output: Contribution to journal › Article › peer-review
Open Access30 Scopus citations