No photo of Ni Zhao

View Scopus Profile

Ni Zhao

Associate Professor

20062025

Research activity per year

Filter
Article

Search results

  • 2015

    Global Analysis of Methylation Profiles From High Resolution CpG Data

    Zhao, N., Bell, D. A., Maity, A., Staicu, A. M., Joubert, B. R., London, S. J. & Wu, M. C., Feb 1 2015, In: Genetic epidemiology. 39, 2, p. 53-64 12 p.

    Research output: Contribution to journal › Article › peer-review

    13 Scopus citations

  • Rare variant testing across methods and thresholds using the multi-kernel sequence kernel association test (MK-SKAT)

    Urrutia, E., Lee, S., Maity, A., Zhao, N., Shen, J., Li, Y. & Wu, M. C., 2015, In: Statistics and its Interface. 8, 4, p. 495-505 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    6 Scopus citations

  • Testing in microbiome-profiling studies with MiRKAT, the microbiome regression-based kernel association test

    Zhao, N., Chen, J., Carroll, I. M., Ringel-Kulka, T., Epstein, M. P., Zhou, H., Zhou, J. J., Ringel, Y., Li, H. & Wu, M. C., May 7 2015, In: American journal of human genetics. 96, 5, p. 797-807 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    108 Scopus citations
  • 2014

    Alterations of LKB1 and KRAS and risk of brain metastasis: Comprehensive characterization by mutation analysis, copy number, and gene expression in non-small-cell lung carcinoma

    Zhao, N., Wilkerson, M. D., Shah, U., Yin, X., Wang, A., Hayward, M. C., Roberts, P., Lee, C. B., Parsons, A. M., Thorne, L. B., Haithcock, B. E., Grilley-Olson, J. E., Stinchcombe, T. E., Funkhouser, W. K., Wong, K. K., Sharpless, N. E. & Hayes, D. N., Nov 1 2014, In: Lung Cancer. 86, 2, p. 255-261 7 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    41 Scopus citations

  • Integrated Genomic Characterization of Papillary Thyroid Carcinoma

    Agrawal, N., Akbani, R., Aksoy, B. A., Ally, A., Arachchi, H., Asa, S. L., Auman, J. T., Balasundaram, M., Balu, S., Baylin, S. B., Behera, M., Bernard, B., Beroukhim, R., Bishop, J. A., Black, A. D., Bodenheimer, T., Boice, L., Bootwalla, M. S., Bowen, J. & Bowlby, R. & 223 others, Bristow, C. A., Brookens, R., Brooks, D., Bryant, R., Buda, E., Butterfield, Y. S. N., Carling, T., Carlsen, R., Carter, S. L., Carty, S. E., Chan, T. A., Chen, A. Y., Cherniack, A. D., Cheung, D., Chin, L., Cho, J., Chu, A., Chuah, E., Cibulskis, K., Ciriello, G., Clarke, A., Clayman, G. L., Cope, L., Copland, J. A., Covington, K., Danilova, L., Davidsen, T., Demchok, J. A., DiCara, D., Dhalla, N., Dhir, R., Dookran, S. S., Dresdner, G., Eldridge, J., Eley, G., El-Naggar, A. K., Eng, S., Fagin, J. A., Fennell, T., Ferris, R. L., Fisher, S., Frazer, S., Frick, J., Gabriel, S. B., Ganly, I., Gao, J., Garraway, L. A., Gastier-Foster, J. M., Getz, G., Gehlenborg, N., Ghossein, R., Gibbs, R. A., Giordano, T. J., Gomez-Hernandez, K., Grimsby, J., Gross, B., Guin, R., Hadjipanayis, A., Harper, H. A., Hayes, D. N., Heiman, D. I., Herman, J. G., Hoadley, K. A., Hofree, M., Holt, R. A., Hoyle, A. P., Huang, F. W., Huang, M., Hutter, C. M., Ideker, T., Iype, L., Jacobsen, A., Jefferys, S. R., Jones, C. D., Jones, S. J. M., Kasaian, K., Kebebew, E., Khuri, F. R., Kim, J., Kramer, R., Kreisberg, R., Kucherlapati, R., Kwiatkowski, D. J., Ladanyi, M., Lai, P. H., Laird, P. W., Lander, E., Lawrence, M. S., Lee, D., Lee, E., Lee, S., Lee, W., Leraas, K. M., Lichtenberg, T. M., Lichtenstein, L., Lin, P., Ling, S., Liu, J., Liu, W., Liu, Y., LiVolsi, V. A., Lu, Y., Ma, Y., Mahadeshwar, H. S., Marra, M. A., Mayo, M., McFadden, D. G., Meng, S., Meyerson, M., Mieczkowski, P. A., Miller, M., Mills, G., Moore, R. A., Mose, L. E., Mungall, A. J., Murray, B. A., Nikiforov, Y. E., Noble, M. S., Ojesina, A. I., Owonikoko, T. K., Ozenberger, B. A., Pantazi, A., Parfenov, M., Park, P. J., Parker, J. S., Paull, E. O., Pedamallu, C. S., Perou, C. M., Prins, J. F., Protopopov, A., Ramalingam, S. S., Ramirez, N. C., Ramirez, R., Raphael, B. J., Rathmell, W. K., Ren, X., Reynolds, S. M., Rheinbay, E., Ringel, M. D., Rivera, M., Roach, J., Robertson, A. G., Rosenberg, M. W., Rosenthal, M., Sadeghi, S., Saksena, G., Sander, C., Santoso, N., Schein, J. E., Schultz, N., Schumacher, S. E., Seethala, R. R., Seidman, J., Senbabaoglu, Y., Seth, S., Sharpe, S., Shaw, K. R. M., Shen, J. P., Shen, R., Sherman, S., Sheth, M., Shi, Y., Shmulevich, I., Sica, G. L., Simons, J. V., Sinha, R., Sipahimalani, P., Smallridge, R. C., Sofia, H. J., Soloway, M. G., Song, X., Sougnez, C., Stewart, C., Stojanov, P., Stuart, J. M., Sumer, S. O., Sun, Y., Tabak, B., Tam, A., Tan, D., Tang, J., Tarnuzzer, R., Taylor, B. S., Thiessen, N., Thorne, L., Thorsson, V., Tuttle, R. M., Umbricht, C. B., Van Den Berg, D. J., Vandin, F., Veluvolu, U., Verhaak, R. G. W., Vinco, M., Voet, D., Walter, V., Wang, Z., Waring, S., Weinberger, P. M., Weinhold, N., Weinstein, J. N., Weisenberger, D. J., Wheeler, D., Wilkerson, M. D., Wilson, J., Williams, M., Winer, D. A., Wise, L., Wu, J., Xi, L., Xu, A. W., Yang, L., Yang, L., Zack, T. I., Zeiger, M. A., Zeng, D., Zenklusen, J. C., Zhao, N., Zhang, H., Zhang, J., Zhang, J., Zhang, W., Zmuda, E. & Zou, L., Oct 23 2014, In: Cell. 159, 3, p. 676-690 15 p.

    Research output: Contribution to journal › Article › peer-review

    1322 Scopus citations

  • SigFuge: Single gene clustering of RNA-seq reveals differential isoform usage among cancer samples

    Kimes, P. K., Cabanski, C. R., Wilkerson, M. D., Zhao, N., Johnson, A. R., Perou, C. M., Makowski, L., Maher, C. A., Liu, Y., Marron, J. S. & Hayes, D. N., Aug 18 2014, In: Nucleic acids research. 42, 14, p. e113

    Research output: Contribution to journal › Article › peer-review

    Open Access
    12 Scopus citations
  • 2013

    ERCC1 protein expression is associated with differential survival in oropharyngeal head and neck squamous cell carcinoma

    Patel, M. R., Zhao, N., Ang, M. K., Stadler, M. E., Fritchie, K., Weissler, M. C., Zanation, A. M., Harris, S. L., Funkhouser, W. K., Olshan, A. F., Shores, C. G. & Hayes, D. N., Oct 2013, In: Otolaryngology - Head and Neck Surgery (United States). 149, 4, p. 587-595 9 p.

    Research output: Contribution to journal › Article › peer-review

    8 Scopus citations

  • Molecular Subtypes in Head and Neck Cancer Exhibit Distinct Patterns of Chromosomal Gain and Loss of Canonical Cancer Genes

    Walter, V., Yin, X., Wilkerson, M. D., Cabanski, C. R., Zhao, N., Du, Y., Ang, M. K., Hayward, M. C., Salazar, A. H., Hoadley, K. A., Fritchie, K., Sailey, C. G., Weissler, M. C., Shockley, W. W., Zanation, A. M., Hackman, T., Thorne, L. B., Funkhouser, W. D., Muldrew, K. L. & Olshan, A. F. & 4 others, Randell, S. H., Wright, F. A., Shores, C. G. & Hayes, D. N., Feb 22 2013, In: PloS one. 8, 2, e56823.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    158 Scopus citations

  • The LKB1 Tumor Suppressor as a Biomarker in Mouse and Human Tissues

    Nakada, Y., Stewart, T. G., Peña, C. G., Zhang, S., Zhao, N., Bardeesy, N., Sharpless, N. E., Wong, K. K., Hayes, D. N. & Castrillon, D. H., Sep 25 2013, In: PloS one. 8, 9, e73449.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    15 Scopus citations
  • 2012

    Different cellular p16 INK4a localisation may signal different survival outcomes in head and neck cancer

    Zhao, N., Ang, M. K., Yin, X. Y., Patel, M. R., Fritchie, K., Thorne, L., Muldrew, K. L., Hayward, M. C., Sun, W., Wilkerson, M. D., Chera, B. S., Hackman, T., Zanation, A. M., Grilley-Olson, J. E., Couch, M. E., Shockley, W. W., Weissler, M. C., Shores, C. G., Funkhouser, W. K. & Olshan, A. F. & 1 others, Hayes, D. N., Jul 24 2012, In: British journal of cancer. 107, 3, p. 482-490 9 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    34 Scopus citations

  • Differential pathogenesis of lung adenocarcinoma subtypes involving sequence mutations, copy number, chromosomal instability, and methylation

    Wilkerson, M. D., Yin, X., Walter, V., Zhao, N., Cabanski, C. R., Hayward, M. C., Miller, C. R., Socinski, M. A., Parsons, A. M., Thorne, L. B., Haithcock, B. E., Veeramachaneni, N. K., Funkhouser, W. K., Randell, S. H., Bernard, P. S., Perou, C. M. & Hayes, D. N., May 10 2012, In: PloS one. 7, 5, e36530.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    127 Scopus citations

  • Phase II efficacy and pharmacogenomic study of selumetinib (AZD6244; ARRY-142886) in iodine-131 refractory papillary thyroid carcinoma with or without follicular elements

    Hayes, D. N., Lucas, A. S., Tanvetyanon, T., Krzyzanowska, M. K., Chung, C. H., Murphy, B. A., Gilbert, J., Mehra, R., Moore, D. T., Sheikh, A., Hoskins, J., Hayward, M. C., Zhao, N., O'Connor, W., Weck, K. E., Cohen, R. B. & Cohen, E. E. W., Apr 1 2012, In: Clinical Cancer Research. 18, 7, p. 2056-2065 10 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    109 Scopus citations
  • 2011

    High XRCC1 protein expression is associated with poorer survival in patients with head and neck squamous cell carcinoma

    Ang, M. K., Patel, M. R., Yin, X. Y., Sundaram, S., Fritchie, K., Zhao, N., Liu, Y., Freemerman, A. J., Wilkerson, M. D., Walter, V., Weissler, M. C., Shockley, W. W., Couch, M. E., Zanation, A. M., Hackman, T., Chera, B. S., Harris, S. L., Miller, C. R., Thorne, L. B. & Hayward, M. C. & 5 others, Funkhouser, W. K., Olshan, A. F., Shores, C. G., Makowski, L. & Hayes, D. N., Oct 15 2011, In: Clinical Cancer Research. 17, 20, p. 6542-6552 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    36 Scopus citations
  • 2010

    Sex-specific gene expression in the BXD mouse liver

    Gatti, D. M., Zhao, N., Chesler, E. J., Bradford, B. U., Shabalin, A. A., Yordanova, R., Lu, L. & Rusyn, I., Aug 2010, In: Physiological Genomics. 42, 3, p. 456-468 13 p.

    Research output: Contribution to journal › Article › peer-review

    23 Scopus citations
  • 2009

    Diurnal temperature range is a risk factor for coronary heart disease death

    Cao, J., Cheng, Y., Zhao, N., Song, W., Jiang, C., Chen, R. & Kan, H., Nov 2009, In: Journal of Epidemiology. 19, 6, p. 328-332 5 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    45 Scopus citations

  • Impact of outdoor air pollution on cardiovascular health in Mainland China

    Kan, H., Huang, W., Chen, B. & Zhao, N., Jan 2009, In: CVD Prevention and Control. 4, 1, p. 71-78 8 p.

    Research output: Contribution to journal › Article › peer-review

    16 Scopus citations

  • Visibility, air quality and daily mortality in Shanghai, China

    Huang, W., Tan, J., Kan, H., Zhao, N., Song, W., Song, G., Chen, G., Jiang, L., Jiang, C., Chen, R. & Chen, B., May 1 2009, In: Science of the Total Environment. 407, 10, p. 3295-3300 6 p.

    Research output: Contribution to journal › Article › peer-review

    129 Scopus citations
  • 2006

    Study on the role of inflammatory factors in the cardiovascular toxicity of PM2.5

    Zhang, Y. H., Cao, S., Ding, J. W., Lin, L., Zhao, N. & Kan, H. D., Feb 2006, In: Zhongguo Huanjing Kexue/China Environmental Science. 26, 1, p. 16-19 4 p.

    Research output: Contribution to journal › Article › peer-review

    1 Scopus citations