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Michael Schatz

Bloomberg Distinguished Professor

20042024

Research activity per year

Search results

  • 2013

    Cultivation and Complete Genome Sequencing of Gloeobacter kilaueensis sp. nov., from a Lava Cave in Kīlauea Caldera, Hawai'i

    Saw, J. H. W., Schatz, M., Brown, M. V., Kunkel, D. D., Foster, J. S., Shick, H., Christensen, S., Hou, S., Wan, X. & Donachie, S. P., Oct 23 2013, In: PloS one. 8, 10, e76376.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

    Ming, R., VanBuren, R., Liu, Y., Yang, M., Han, Y., Li, L. T., Zhang, Q., Kim, M. J., Schatz, M. C., Campbell, M., Li, J., Bowers, J. E., Tang, H., Lyons, E., Ferguson, A. A., Narzisi, G., Nelson, D. R., Blaby-Haas, C. E., Gschwend, A. R. & Jiao, Y. & 51 others, Der, J. P., Zeng, F., Han, J., Min, X. J., Hudson, K. A., Singh, R., Grennan, A. K., Karpowicz, S. J., Watling, J. R., Ito, K., Robinson, S. A., Hudson, M. E., Yu, Q., Mockler, T. C., Carroll, A., Zheng, Y., Sunkar, R., Jia, R., Chen, N., Arro, J., Wai, C. M., Wafula, E., Spence, A., Han, Y., Xu, L., Zhang, J., Peery, R., Haus, M. J., Xiong, W., Walsh, J. A., Wu, J., Wang, M. L., Zhu, Y. J., Paull, R. E., Britt, A. B., Du, C., Downie, S. R., Schuler, M. A., Michael, T. P., Long, S. P., Ort, D. R., William Schopf, J., Gang, D. R., Jiang, N., Yandell, M., dePamphilis, C. W., Merchant, S. S., Paterson, A. H., Buchanan, B. B., Li, S. & Shen-Miller, J., May 10 2013, In: Genome biology. 14, 5, R41.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Hawkeye and AMOS: Visualizing and assessing the quality of genome assemblies

    Schatz, M. C., Phillippy, A. M., Sommer, D. D., Delcher, A. L., Puiu, D., Narzisi, G., Salzberg, S. L. & Pop, M., Mar 2013, In: Briefings in bioinformatics. 14, 2, p. 213-224 12 p., bbr074.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    29 Scopus citations

  • Sixty years of genome biology

    Doolittle, W. F., Fraser, P., Gerstein, M. B., Graveley, B. R., Henikoff, S., Huttenhower, C., Oshlack, A., Ponting, C. P., Rinn, J. L., Schatz, M. C., Ule, J., Weigel, D. & Weinstock, G. M., Apr 25 2013, In: Genome biology. 14, 4, 113.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • The advantages of SMRT sequencing

    Roberts, R. J., Carneiro, M. O. & Schatz, M. C., Jul 3 2013, In: Genome biology. 14, 6, 405.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • The advantages of SMRT sequencing

    Roberts, R. J., Carneiro, M. O. & Schatz, M. C., Jul 2013, In: Genome biology. 14, 7, 405.

    Research output: Contribution to journal › Letter › peer-review

    Open Access

  • The DNA60IFX contest

    Schatz, M. C., Taylor, J. & Schelhorn, S. E., Jun 28 2013, In: Genome biology. 14, 6, 124.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • The DNA data deluge

    Schatz, M. C. & Langmead, B., 2013, In: IEEE Spectrum. 50, 7, p. 28-33 6 p., 6545119.

    Research output: Contribution to journal › Article › peer-review

    40 Scopus citations
  • 2012

    Computational thinking in the era of big data biology

    Schatz, M. C., 2012, In: Genome biology. 13, 11, p. 177 1 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Current challenges in de novo plant genome sequencing and assembly

    Schatz, M. C., Witkowski, J. & McCombie, W. R., Apr 27 2012, In: Genome biology. 13, 4, 243.

    Research output: Contribution to journal › Review article › peer-review

    Open Access

  • De Novo Gene Disruptions in Children on the Autistic Spectrum

    Iossifov, I., Ronemus, M., Levy, D., Wang, Z., Hakker, I., Rosenbaum, J., Yamrom, B., Lee, Y. H., Narzisi, G., Leotta, A., Kendall, J., Grabowska, E., Ma, B., Marks, S., Rodgers, L., Stepansky, A., Troge, J., Andrews, P., Bekritsky, M. & Pradhan, K. & 15 others, Ghiban, E., Kramer, M., Parla, J., Demeter, R., Fulton, L. L., Fulton, R. S., Magrini, V. J., Ye, K., Darnell, J. C., Darnell, R. B., Mardis, E. R., Wilson, R. K., Schatz, M. C., McCombie, R. W. & Wigler, M., Apr 26 2012, In: Neuron. 74, 2, p. 285-299 15 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • GAGE: A critical evaluation of genome assemblies and assembly algorithms

    Salzberg, S. L., Phillippy, A. M., Zimin, A., Puiu, D., Magoc, T., Koren, S., Treangen, T. J., Schatz, M. C., Delcher, A. L., Roberts, M., Marcxais, G., Pop, M. & Yorke, J. A., Mar 2012, In: Genome research. 22, 3, p. 557-567 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    426 Scopus citations

  • GAGE: A critical evaluation of genome assemblies and assembly algorithms (Genome Research (2012) 22 (557-567))

    Salzberg, S. L., Phillippy, A. M., Zimin, A., Puiu, D., Magoc, T., Koren, S., Treangen, T. J., Schatz, M. C., Delcher, A., Roberts, M., Marçais, G., Pop, M. & Yorke, J. A., Jun 2012, In: Genome research. 22, 6, p. 1196 1 p.

    Research output: Contribution to journal › Comment/debate › peer-review

    1 Scopus citations

  • Genomic dark matter: The reliability of short read mapping illustrated by the genome mappability score

    Lee, H. & Schatz, M. C., Aug 2012, In: Bioinformatics. 28, 16, p. 2097-2105 9 p., bts330.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Genotyping in the cloud with crossbow

    Gurtowski, J., Schatz, M. C. & Langmead, B., Sep 2012, In: Current Protocols in Bioinformatics. SUPPL.39, 15.3.

    Research output: Contribution to journal › Article › peer-review

    28 Scopus citations

  • Hybrid error correction and de novo assembly of single-molecule sequencing reads

    Koren, S., Schatz, M. C., Walenz, B. P., Martin, J., Howard, J. T., Ganapathy, G., Wang, Z., Rasko, D. A., McCombie, W. R., Jarvis, E. D. & Phillippy, A. M., Jul 2012, In: Nature biotechnology. 30, 7, p. 693-700 8 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Rate of meristem maturation determines inflorescence architecture in tomato

    Park, S. J., Jiang, K., Schatz, M. C. & Lippman, Z. B., Jan 10 2012, In: Proceedings of the National Academy of Sciences of the United States of America. 109, 2, p. 639-644 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • The rise of a digital immune system

    Schatz, M. C. & Phillippy, A. M., Jul 12 2012, In: GigaScience. 1, 4, 4.

    Research output: Contribution to journal › Comment/debate › peer-review

    Open Access
  • 2011

    Assemblathon 1: A competitive assessment of de novo short read assembly methods

    Earl, D., Bradnam, K., St. John, J., Darling, A., Lin, D., Fass, J., Yu, H. O. K., Buffalo, V., Zerbino, D. R., Diekhans, M., Nguyen, N., Ariyaratne, P. N., Sung, W. K., Ning, Z., Haimel, M., Simpson, J. T., Fonseca, N. A., Birol, I., Docking, T. R. & Ho, I. Y. & 50 others, Rokhsar, D. S., Chikhi, R., Lavenier, D., Chapuis, G., Naquin, D., Maillet, N., Schatz, M. C., Kelley, D. R., Phillippy, A. M., Koren, S., Yang, S. P., Wu, W., Chou, W. C., Srivastava, A., Shaw, T. I., Ruby, J. G., Skewes-Cox, P., Betegon, M., Dimon, M. T., Solovyev, V., Seledtsov, I., Kosarev, P., Vorobyev, D., Ramirez-Gonzalez, R., Leggett, R., MacLean, D., Xia, F., Luo, R., Li, Z., Xie, Y., Liu, B., Gnerre, S., MacCallum, I., Przybylski, D., Ribeiro, F. J., Sharpe, T., Hall, G., Kersey, P. J., Durbin, R., Jackman, S. D., Chapman, J. A., Huang, X., DeRisi, J. L., Caccamo, M., Li, Y., Jaffe, D. B., Green, R. E., Haussler, D., Korf, I. & Paten, B., Dec 2011, In: Genome research. 21, 12, p. 2224-2241 18 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access

  • Complex microbiome underlying secondary and primary metabolism in the tunicate-Prochloron symbiosis

    Donia, M. S., Fricke, W. F., Partensky, F., Cox, J., Elshahawi, S. I., White, J. R., Phillippy, A. M., Schatz, M. C., Piel, J., Haygood, M. G., Ravel, J. & Schmidt, E. W., Dec 20 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 51, p. E1423-E1432

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Rapid parallel genome indexing with MapReduce

    Menon, R. K., Bhat, G. P. & Schatz, M. C., 2011, MapReduce'11 - Proceedings of the 2nd International Workshop on MapReduce and Its Applications. p. 51-58 8 p. (MapReduce'11 - Proceedings of the 2nd International Workshop on MapReduce and Its Applications).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

    Bogdanove, A. J., Koebnik, R., Lu, H., Furutani, A., Angiuoli, S. V., Patil, P. B., Van Sluys, M. A., Ryan, R. P., Meyer, D. F., Han, S. W., Aparna, G., Rajaram, M., Delcher, A. L., Phillippy, A. M., Puiu, D., Schatz, M. C., Shumway, M., Sommer, D. D., Trapnell, C. & Benahmed, F. & 23 others, Dimitrov, G., Madupu, R., Radune, D., Sullivan, S., Jha, G., Ishihara, H., Lee, S. W., Pandey, A., Sharma, V., Sriariyanun, M., Szurek, B., Vera-Cruz, C. M., Dorman, K. S., Ronald, P. C., Verdier, V., Dow, J. M., Sonti, R. V., Tsuge, S., Brendel, V. P., Rabinowicz, P. D., Leach, J. E., White, F. F. & Salzberg, S. L., Oct 2011, In: Journal of bacteriology. 193, 19, p. 5450-5464 15 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    129 Scopus citations
  • 2010

    Assembly complexity of prokaryotic genomes using short reads

    Kingsford, C., Schatz, M. C. & Pop, M., Jan 12 2010, In: BMC Bioinformatics. 11, 21.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Assembly of large genomes using second-generation sequencing

    Schatz, M. C., Delcher, A. L. & Salzberg, S. L., Sep 2010, In: Genome research. 20, 9, p. 1165-1173 9 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    293 Scopus citations

  • Cloud computing and the DNA data race

    Schatz, M. C., Langmead, B. & Salzberg, S. L., Jul 2010, In: Nature biotechnology. 28, 7, p. 691-693 3 p.

    Research output: Contribution to journal › Comment/debate › peer-review

    Open Access
    208 Scopus citations

  • Design patterns for efficient graph algorithms in MapReduce

    Lin, J. & Schatz, M., 2010, Proceedings of the 8th Workshop on Mining and Learning with Graphs, MLG'10. p. 78-85 8 p. (Proceedings of the 8th Workshop on Mining and Learning with Graphs, MLG'10).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Efforts to deregulate Rainbow papaya in Japan: Molecular characterization of transgene and vector inserts

    Suzuki, J. Y., Tripathi, S., Fermín, G. A., Jan, F. J., Hou, S., Saw, J. H., Ackerman, C. M., Yu, Q., Schatz, M. C., Pitz, K. Y., Yépes, M., Fitch, M. M. M., Manshardt, R. M., Slightom, J. L., Ferreira, S. A., Salzberg, S. L., Alam, M., Ming, R., Moore, P. H. & Gonsalves, D., Jan 31 2010, Acta Horticulturae. International Society for Horticultural Science, p. 235-240 6 p. (Acta Horticulturae; vol. 851).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Genomic survey of the ectoparasitic mite Varroa destructor, a major pest of the honey bee Apis mellifera

    Cornman, S. R., Schatz, M. C., Johnston, S. J., Chen, Y. P., Pettis, J., Hunt, G., Bourgeois, L., Elsik, C., Anderson, D., Grozinger, C. M. & Evans, J. D., Oct 25 2010, In: BMC genomics. 11, 1, 602.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Integrated microbial survey analysis of prokaryotic communities for the PhyloChip microarray

    Schatz, M. C., Phillippy, A. M., Gajer, P., DeSantis, T. Z., Andersen, G. L. & Ravel, J., Aug 2010, In: Applied and environmental microbiology. 76, 16, p. 5636-5638 3 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Multi-platform next-generation sequencing of the domestic Turkey (Meleagris gallopavo): Genome assembly and analysis

    Dalloul, R. A., Long, J. A., Zimin, A. V., Aslam, L., Beal, K., Blomberg, L. A., Bouffard, P., Burt, D. W., Crasta, O., Crooijmans, R. P. M. A., Cooper, K., Coulombe, R. A., De, S., Delany, M. E., Dodgson, J. B., Dong, J. J., Evans, C., Frederickson, K. M., Flicek, P. & Florea, L. & 51 others, Folkerts, O., Groenen, M. A. M., Harkins, T. T., Herrero, J., Hoffmann, S., Megens, H. J., Jiang, A., de Jong, P., Kaiser, P., Kim, H., Kim, K. W., Kim, S., Langenberger, D., Lee, M. K., Lee, T., Mane, S., Marcais, G., Marz, M., McElroy, A. P., Modise, T., Nefedov, M., Notredame, C., Paton, I. R., Payne, W. S., Pertea, G., Prickett, D., Puiu, D., Qioa, D., Raineri, E., Ruffier, M., Salzberg, S. L., Schatz, M. C., Scheuring, C., Schmidt, C. J., Schroeder, S., Searle, S. M. J., Smith, E. J., Smith, J., Sonstegard, T. S., Stadler, P. F., Tafer, H., Tu, Z., van Tassell, C. P., Vilella, A. J., Williams, K. P., Yorke, J. A., Zhang, L., Zhang, H. B., Zhang, X., Zhang, Y. & Reed, K. M., Sep 2010, In: PLoS biology. 8, 9, e1000475.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    293 Scopus citations

  • Quake: Quality-aware detection and correction of sequencing errors

    Kelley, D. R., Schatz, M. C. & Salzberg, S. L., Nov 29 2010, In: Genome biology. 11, 11, R116.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    397 Scopus citations

  • The missing graphical user interface for genomics

    Schatz, M. C., Aug 25 2010, In: Genome biology. 11, 8, 128.

    Research output: Contribution to journal › Comment/debate › peer-review

    Open Access
  • 2009

    A whole-genome assembly of the domestic cow, Bos taurus

    Zimin, A. V., Delcher, A. L., Florea, L., Kelley, D. R., Schatz, M. C., Puiu, D., Hanrahan, F., Pertea, G., Van Tassell, C. P., Sonstegard, T. S., Marçais, G., Roberts, M., Subramanian, P., Yorke, J. A. & Salzberg, S. L., Apr 24 2009, In: Genome biology. 10, 4, R42.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    773 Scopus citations

  • CloudBurst: Highly sensitive read mapping with MapReduce

    Schatz, M. C., Jun 2009, In: Bioinformatics. 25, 11, p. 1363-1369 7 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Genomic analyses of the microsporidian Nosema ceranae, an emergent pathogen of honey bees

    Cornman, R. S., Chen, Y. P., Schatz, M. C., Street, C., Zhao, Y., Desany, B., Egholm, M., Hutchison, S., Pettis, J. S., Lipkin, W. I. & Evans, J. D., Jun 2009, In: PLoS pathogens. 5, 6, e1000466.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Optimizing data intensive GPGPU computations for DNA sequence alignment

    Trapnell, C. & Schatz, M. C., Aug 2009, In: Parallel Computing. 35, 8-9, p. 429-440 12 p.

    Research output: Contribution to journal › Article › peer-review

  • Revealing biological modules via graph summarization

    Navlakha, S., Schatz, M. C. & Kingsford, C., 2009, In: Journal of Computational Biology. 16, 2, p. 253-264 12 p.

    Research output: Contribution to journal › Article › peer-review

  • Searching for SNPs with cloud computing

    Langmead, B., Schatz, M. C., Lin, J., Pop, M. & Salzberg, S. L., Nov 20 2009, In: Genome biology. 10, 11, R134.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    349 Scopus citations
  • 2008

    Comparative genomics of mutualistic viruses of Glyptapanteles parasitic wasps.

    Desjardins, C. A., Gundersen-Rindal, D. E., Hostetler, J. B., Tallon, L. J., Fadrosh, D. W., Fuester, R. W., Pedroni, M. J., Haas, B. J., Schatz, M. C., Jones, K. M., Crabtree, J., Forberger, H. & Nene, V., 2008, In: Genome biology. 9, 12, p. R183

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Erratum: Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A (BMC Genomics (2008) vol. 9 (204))

    Salzberg, S. L., Sommer, D. D., Schatz, M. C., Phillippy, A. M., Rabinowicz, P. D., Tsuge, S., Furutani, A., Ochiai, H., Delcher, A. L., Kelley, D., Madupu, R., Puiu, D., Radune, D., Shumway, M., Trapnell, C., Aparna, G., Jha, G., Pandey, A., Patil, P. B. & Ishihara, H. & 17 others, Meyer, D. F., Szurek, B., Verdier, V., Koebnik, R., Dow, J. M., Ryan, R. P., Hirata, H., Tsuyumu, S., Lee, S. W., Seo, Y. S., Sriariyanum, M., Ronald, P. C., Sonti, R. V., Van Sluys, M. A., Leach, J. E., White, F. F. & Bogdanove, A. J., Nov 11 2008, In: BMC genomics. 9, 534.

    Research output: Contribution to journal › Comment/debate › peer-review

    Open Access
    3 Scopus citations

  • Genome assembly forensics: Finding the elusive mis-assembly

    Phillippy, A. M., Schatz, M. C. & Pop, M., Mar 14 2008, In: Genome biology. 9, 3, R55.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A

    Salzberg, S. L., Sommer, D. D., Schatz, M. C., Phillippy, A. M., Rabinowicz, P. D., Tsuge, S., Furutani, A., Ochiai, H., Delcher, A. L., Kelley, D., Madupu, R., Puiu, D., Radune, D., Shumway, M., Trapnell, C., Aparna, G., Jha, G., Pandey, A., Patil, P. B. & Ishihara, H. & 15 others, Meyer, D. F., Szurek, B., Verdier, V., Koebnik, R., Maxwell, J. M., Ryan, R. P., Hirata, H., Tsuyumu, S., Won Lee, S., Ronald, P. C., Sonti, R. V., Van Sluys, M. A., Leach, J. E., White, F. F. & Bogdanove, A. J., May 1 2008, In: BMC genomics. 9, 204.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    259 Scopus citations

  • The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)

    Ming, R., Hou, S., Feng, Y., Yu, Q., Dionne-Laporte, A., Saw, J. H., Senin, P., Wang, W., Ly, B. V., Lewis, K. L. T., Salzberg, S. L., Feng, L., Jones, M. R., Skelton, R. L., Murray, J. E., Chen, C., Qian, W., Shen, J., Du, P. & Eustice, M. & 65 others, Tong, E., Tang, H., Lyons, E., Paull, R. E., Michael, T. P., Wall, K., Rice, D. W., Albert, H., Wang, M. L., Zhu, Y. J., Schatz, M., Nagarajan, N., Acob, R. A., Guan, P., Blas, A., Wai, C. M., Ackerman, C. M., Ren, Y., Liu, C., Wang, J., Wang, J., Na, J. K., Shakirov, E. V., Haas, B., Thimmapuram, J., Nelson, D., Wang, X., Bowers, J. E., Gschwend, A. R., Delcher, A. L., Singh, R., Suzuki, J. Y., Tripathi, S., Neupane, K., Wei, H., Irikura, B., Paidi, M., Jiang, N., Zhang, W., Presting, G., Windsor, A., Navajas-Pérez, R., Torres, M. J., Feltus, F. A., Porter, B., Li, Y., Burroughs, A. M., Luo, M. C., Liu, L., Christopher, D. A., Mount, S. M., Moore, P. H., Sugimura, T., Jiang, J., Schuler, M. A., Friedman, V., Mitchell-Olds, T., Shippen, D. E., Depamphilis, C. W., Palmer, J. D., Freeling, M., Paterson, A. H., Gonsalves, D., Wang, L. & Alam, M., Apr 24 2008, In: Nature. 452, 7190, p. 991-996 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    721 Scopus citations
  • 2007

    Draft genome of the filarial nematode parasite Brugia malayi

    Ghedin, E., Wang, S., Spiro, D., Caler, E., Zhao, Q., Crabtree, J., Allen, J. E., Delcher, A. L., Guiliano, D. B., Miranda-Saavedra, D., Angiuoli, S. V., Creasy, T., Amedeo, P., Haas, B., El-Sayed, N. M., Wortman, J. R., Feldblyum, T., Tallon, L., Schatz, M. & Shumway, M. & 51 others, Koo, H., Salzberg, S. L., Schobel, S., Pertea, M., Pop, M., White, O., Barton, G. J., Carlow, C. K. S., Crawford, M. J., Daub, J., Dimmic, M. W., Estes, C. F., Foster, J. M., Ganatra, M., Gregory, W. F., Johnson, N. M., Jin, M., Komuniecki, R., Korf, I., Kumar, S., Laney, S., Li, B. W., Li, W., Lindblom, T. H., Lustigman, S., Ma, D., Maina, C. V., Martin, D. M. A., McCarter, J. P., McReynolds, L., Mitreva, M., Nutman, T. B., Parkinson, J., Peregrín-Alvarez, J. M., Poole, C., Ren, Q., Saunders, L., Sluder, A. E., Smith, K., Stanke, M., Unnasch, T. R., Ware, J., Wei, A. D., Weil, G., Williams, D. J., Zhang, Y., Williams, S. A., Fraser-Liggett, C., Slatko, B., Blaxter, M. L. & Scott, A. L., Sep 21 2007, In: Science. 317, 5845, p. 1756-1760 5 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    484 Scopus citations

  • Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis

    Carlton, J. M., Hirt, R. P., Silva, J. C., Delcher, A. L., Schatz, M., Zhao, Q., Wortman, J. R., Bidwell, S. L., Alsmark, U. C. M., Besteiro, S., Sicheritz-Ponten, T., Noel, C. J., Dacks, J. B., Foster, P. G., Simillion, C., Van De Peer, Y., Miranda-Saavedra, D., Barton, G. J., Westrop, G. D. & Müller, S. & 45 others, Dessi, D., Fiori, P. L., Ren, Q., Paulsen, I., Zhang, H., Bastida-Corcuera, F. D., Simoes-Barbosa, A., Brown, M. T., Hayes, R. D., Mukherjee, M., Okumura, C. Y., Schneider, R., Smith, A. J., Vanacova, S., Villalvazo, M., Haas, B. J., Pertea, M., Feldblyum, T. V., Utterback, T. R., Shu, C. L., Osoegawa, K., De Jong, P. J., Hrdy, I., Horvathova, L., Zubacova, Z., Dolezal, P., Malik, S. B., Logsdon, J. M., Henze, K., Gupta, A., Wang, C. C., Dunne, R. L., Upcroft, J. A., Upcroft, P., White, O., Salzberg, S. L., Tang, P., Chiu, C. H., Lee, Y. S., Embley, T. M., Coombs, G. H., Mottram, J. C., Tachezy, J., Fraser-Liggett, C. M. & Johnson, P. J., Jan 12 2007, In: Science. 315, 5809, p. 207-212 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    569 Scopus citations

  • Evolution of genes and genomes on the Drosophila phylogeny

    Clark, A. G., Eisen, M. B., Smith, D. R., Bergman, C. M., Oliver, B., Markow, T. A., Kaufman, T. C., Kellis, M., Gelbart, W., Iyer, V. N., Pollard, D. A., Sackton, T. B., Larracuente, A. M., Singh, N. D., Abad, J. P., Abt, D. N., Adryan, B., Aguade, M., Akashi, H. & Anderson, W. W. & 395 others, Aquadro, C. F., Ardell, D. H., Arguello, R., Artieri, C. G., Barbash, D. A., Barker, D., Barsanti, P., Batterham, P., Batzoglou, S., Begun, D., Bhutkar, A., Blanco, E., Bosak, S. A., Bradley, R. K., Brand, A. D., Brent, M. R., Brooks, A. N., Brown, R. H., Butlin, R. K., Caggese, C., Calvi, B. R., Bernardo De Carvalho, A., Caspi, A., Castrezana, S., Celniker, S. E., Chang, J. L., Chapple, C., Chatterji, S., Chinwalla, A., Civetta, A., Clifton, S. W., Comeron, J. M., Costello, J. C., Coyne, J. A., Daub, J., David, R. G., Delcher, A. L., Delehaunty, K., Do, C. B., Ebling, H., Edwards, K., Eickbush, T., Evans, J. D., Filipski, A., Findeiß, S., Freyhult, E., Fulton, L., Fulton, R., Garcia, A. 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    Research output: Contribution to journal › Article › peer-review

    Open Access
    1361 Scopus citations

  • Genome sequence of Aedes aegypti, a major arbovirus vector

    Nene, V., Wortman, J. R., Lawson, D., Haas, B., Kodira, C., Tu, Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., Ren, Q., Zdobnov, E. M., Lobo, N. F., Campbell, K. S., Brown, S. E., Bonaldo, M. F., Zhu, J., Sinkins, S. P., Hogenkamp, D. G. & Amedeo, P. & 75 others, Arensburger, P., Atkinson, P. W., Bidwell, S., Biedler, J., Birney, E., Bruggner, R. V., Costas, J., Coy, M. R., Crabtree, J., Crawford, M., DeBruyn, B., DeCaprio, D., Eiglmeier, K., Eisenstadt, E., El-Dorry, H., Gelbart, W. M., Gomes, S. L., Hammond, M., Hannick, L. I., Hogan, J. R., Holmes, M. H., Jaffe, D., Johnston, J. S., Kennedy, R. C., Koo, H., Kravitz, S., Kriventseva, E. V., Kulp, D., LaButti, K., Lee, E., Li, S., Lovin, D. D., Mao, C., Mauceli, E., Menck, C. F. M., Miller, J. R., Montgomery, P., Mori, A., Nascimento, A. L., Naveira, H. F., Nusbaum, C., O'Leary, S., Orvis, J., Pertea, M., Quesneville, H., Reidenbach, K. R., Rogers, Y. H., Roth, C. W., Schneider, J. R., Schatz, M., Shumway, M., Stanke, M., Stinson, E. O., Tubio, J. M. C., VanZee, J. P., Verjovski-Almeida, S., Werner, D., White, O., Wyder, S., Zeng, Q., Zhao, Q., Zhao, Y., Hill, C. A., Raikhel, A. S., Soares, M. B., Knudson, D. L., Lee, N. H., Galagan, J., Salzberg, S. L., Paulsen, I. T., Dimopoulos, G., Collins, F. H., Birren, B., Fraser-Liggett, C. M. & Severson, D. W., Jun 22 2007, In: Science. 316, 5832, p. 1718-1723 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    784 Scopus citations

  • Hawkeye: An interactive visual analytics tool for genome assemblies

    Schatz, M. C., Phillippy, A. M., Shneiderman, B. & Salzberg, S. L., Mar 9 2007, In: Genome biology. 8, 3, R34.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    59 Scopus citations

  • High-throughput sequence alignment using Graphics Processing Units

    Schatz, M. C., Trapnell, C., Delcher, A. L. & Varshney, A., Dec 10 2007, In: BMC Bioinformatics. 8, 474.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    223 Scopus citations

  • Structure and evolution of a proviral locus of Glyptapanteles indiensis bracovirus

    Desjardins, C. A., Gundersen-Rindal, D. E., Hostetler, J. B., Tallon, L. J., Fuester, R. W., Schatz, M. C., Pedroni, M. J., Fadrosh, D. W., Haas, B. J., Toms, B. S., Chen, D. & Nene, V., 2007, In: BMC microbiology. 7, 61.

    Research output: Contribution to journal › Article › peer-review

    Open Access