Ludmila Danilova

Research output

Research output per year 2001 2018 2020 2024

• 132 Article
• 29 Comment/debate
• 2 Review article
• 1 Short survey

Research output per year

Research output per year

Search results

• 2023

  Author Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers (Nature Genetics, (2020), 52, 3, (342-352), 10.1038/s41588-019-0557-x)

  PCAWG Consortium, May 2023, In: Nature genetics. 55, 5, p. 892 1 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Seoul 100%
  • Mitochondrial Genome 98%
  • Korea 80%
  • Genome 52%
  • Neoplasms 25%

• Author Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers (Nature Genetics, (2020), 52, 3, (342-352), 10.1038/s41588-019-0557-x)

  PCAWG Consortium, Jun 2023, In: Nature genetics. 55, 6, p. 1078 1 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Mitochondrial Genome 100%
  • Genome 53%
  • Neoplasms 25%

• Author Correction: The landscape of viral associations in human cancers (Nature Genetics, (2020), 52, 3, (320-330), 10.1038/s41588-019-0558-9)

  PCAWG Pathogens & PCAWG Consortium, Jun 2023, In: Nature genetics. 55, 6, p. 1077 1 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Genome 100%
  • Neoplasms 47%
  • Germany 32%
  • Infections 17%

• Author Correction: Pan-cancer analysis of whole genomes (Nature, (2020), 578, 7793, (82-93), 10.1038/s41586-020-1969-6)

  The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium, Feb 16 2023, In: Nature. 614, 7948, p. E39

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Genome 100%
  • Neoplasms 47%

• Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing (Nature Genetics, (2020), 52, 3, (331-341), 10.1038/s41588-019-0576-7)

  PCAWG Structural Variation Working Group & PCAWG Consortium, Jun 2023, In: Nature genetics. 55, 6, p. 1076 1 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Chromothripsis 100%
  • Whole Genome Sequencing 67%
  • Genome 39%
  • Neoplasms 18%

• Author Correction: Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer (Nature Genetics, (2020), 52, 3, (294-305), 10.1038/s41588-019-0564-y)

  PCAWG Structural Variation Working Group & PCAWG Consortium, Jun 2023, In: Nature genetics. 55, 6, p. 1079 1 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Chromatin 100%
  • Genome 76%
  • Neoplasms 36%

• Author Correction: Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition (Nature Genetics, (2020), 52, 3, (306-319), 10.1038/s41588-019-0562-0)

  PCAWG Structural Variation Working Group & PCAWG Consortium, Jun 2023, In: Nature genetics. 55, 6, p. 1080 1 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Genome 100%
  • Medicine 53%
  • Neoplasms 47%
  • Baltimore 47%
  • Quebec 44%

• Erratum: Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces (Cell Systems (2023) 14(4) (285–301.e4), (S2405471223000807), (10.1016/j.cels.2023.03.004))

  Deshpande, A., Loth, M., Sidiropoulos, D. N., Zhang, S., Yuan, L., Bell, A. T. F., Zhu, Q., Ho, W. J., Santa-Maria, C., Gilkes, D. M., Williams, S. R., Uytingco, C. R., Chew, J., Hartnett, A., Bent, Z. W., Favorov, S., Popel, A. S., Yarchoan, M., Kiemen, A., Wu, P. H., & 10 othersFujikura, K., Wirtz, D., Wood, L. D., Zheng, L., Jaffee, E. M., Anders, R. A., Danilova, L., Stein-O'Brien, G., Kagohara, L. T. & Fertig, E. J., Aug 16 2023, In: Cell Systems. 14, 8, p. 722 1 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Confusion 100%
  • Tumor Microenvironment 94%
  • Emotions 71%

• Publisher Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers (Nature Genetics, (2020), 52, 3, (342-352), 10.1038/s41588-019-0557-x)

  PCAWG Consortium, May 2023, In: Nature genetics. 55, 5, p. 893 1 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Mitochondrial Genome 100%
  • Licensure 86%
  • Neoplasms 25%
• 2022

  Author Correction: Pathway and network analysis of more than 2500 whole cancer genomes (Nature Communications, (2020), 11, 1, (729), 10.1038/s41467-020-14367-0)

  PCAWG Drivers and Functional Interpretation Working Group & PCAWG Consortium, Dec 1 2022, In: Nature communications. 13, 1, 7566.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

• Author Correction: Divergent mutational processes distinguish hypoxic and normoxic tumours (Nature Communications, (2020), 11, 1, (737), 10.1038/s41467-019-14052-x)

  PCAWG Consortium, Dec 2022, In: Nature communications. 13, 1, 7569.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • genome 100%
  • document markup languages 91%
  • tumors 73%
  • cancer 71%
  • Communication 69%

• Author Correction: Genomic footprints of activated telomere maintenance mechanisms in cancer (Nature Communications, (2020), 11, 1, (733), 10.1038/s41467-019-13824-9)

  PCAWG Structural Variation Working Group & PCAWG Consortium, Dec 1 2022, In: Nature communications. 13, 1, 7574.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • telomeres 100%
  • genome 76%
  • document markup languages 70%
  • footprints 66%
  • Telomere 64%

• Author Correction: Integrative pathway enrichment analysis of multivariate omics data (Nature Communications, (2020), 11, 1, (735), 10.1038/s41467-019-13983-9)

  PCAWG Drivers and Functional Interpretation Working Group & PCAWG Consortium, Dec 1 2022, In: Nature communications. 13, 1, 7570.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • genome 100%
  • document markup languages 91%
  • cancer 71%
  • Communication 69%
  • communication 63%

• Author Correction: A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns (Nature Communications, (2020), 11, 1, (728), 10.1038/s41467-019-13825-8)

  PCAWG Tumor Subtypes and Clinical Translation Working Group & PCAWG Consortium, Dec 2022, In: Nature communications. 13, 1, 7573.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Deep Learning 100%
  • genome 94%
  • passengers 93%
  • document markup languages 86%
  • mutations 84%

• Author Correction: Inferring structural variant cancer cell fraction (Nature Communications, (2020), 11, 1, (730), 10.1038/s41467-020-14351-8)

  PCAWG Evolution and Heterogeneity Working Group & PCAWG Consortium, Dec 1 2022, In: Nature communications. 13, 1, 7568.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • genome 100%
  • cancer 71%
  • Communication 69%
  • document markup languages 68%
  • communication 63%

• Author Correction: Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig (Nature Communications, (2020), 11, 1, (731), 10.1038/s41467-020-14352-7)

  PCAWG Evolution and Heterogeneity Working Group & PCAWG Consortium, Dec 1 2022, In: Nature communications. 13, 1, 7567.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • genome 100%
  • document markup languages 91%
  • mutations 89%
  • cancer 71%
  • Communication 69%

• Author Correction: High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations (Nature Communications, (2020), 11, 1, (736), 10.1038/s41467-019-13885-w)

  PCAWG Transcriptome Working Group, PCAWG Structural Variation Working Group & PCAWG Consortium, Dec 1 2022, In: Nature communications. 13, 1, 7572.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • genome 100%
  • Gene Rearrangement 89%
  • genes 89%
  • cancer 71%
  • Communication 69%

• Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower (Nature Communications, (2020), 11, 1, (734), 10.1038/s41467-019-13929-1)

  PCAWG Drivers and Functional Interpretation Working Group & PCAWG Consortium, Dec 1 2022, In: Nature communications. 13, 1, 7571.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • impact tests 100%
  • genome 79%
  • cancer 71%
  • Communication 69%
  • communication 63%
• 2020

  Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples (Nature Communications, (2020), 11, 1, (4748), 10.1038/s41467-020-18151-y)

  MC3 Working Group, PCAWG novel somatic mutation calling methods working group & PCAWG Consortium, Dec 1 2020, In: Nature communications. 11, 1, 6232.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • genome 100%
  • Exome 92%
  • mutations 89%
  • medicine 82%
  • cancer 71%

• Erratum: Novel insight into mutational landscape of head and neck squamous cell carcinoma (PLoS ONE (2014) 9: 3 (e93102) DOI: 10.1371/journal.pone.0093102)

  Gaykalova, D., Mambo, E., Choudhary, A., Houghton, J., Buddavarapu, K., Sanford, T., Darden, W., Adai, A., Hadd, A., Latham, G., Danilova, L. V., Bishop, J., Li, R. J., Westra, W. H., Hennessey, P., Koch, W. M., Ochs, M. F., Califano, J. A. & Sun, W., May 2020, In: PloS one. 15, 5, e0233409.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Squamous Cell Carcinoma of Head and Neck 100%
• 2019

  Correction to: persistent mutant oncogene specific T cells in two patients benefitting from anti-PD-1 (Journal for Immuno Therapy of Cancer (2019) 7 (40) DOI: 10.1186/s40425-018-0492-x)

  Smith, K. N., Llosa, N. J., Cottrell, T. R., Siegel, N., Fan, H., Suri, P., Chan, H. Y., Guo, H., Oke, T., Awan, A. H., Verde, F., Danilova, L., Anagnostou, V., Tam, A. J., Luber, B. S., Bartlett, B. R., Aulakh, L. K., Sidhom, J. W., Zhu, Q., Sears, C. L., & 21 othersCope, L., Sharfman, W. H., Thompson, E. D., Riemer, J., Marrone, K. A., Naidoo, J., Velculescu, V. E., Forde, P. M., Vogelstein, B., Kinzler, K. W., Papadopoulos, N., Durham, J. N., Wang, H., Le, D. T., Justesen, S., Taube, J. M., Diaz, L. A., Brahmer, J. R., Pardoll, D. M., Anders, R. A. & Housseau, F., Mar 6 2019, In: Journal for immunotherapy of cancer. 7, 1, 7.

  Research output: Contribution to journal › Comment/debate › peer-review

  • Consultants 100%
  • Oncogenes 88%
  • T-Lymphocytes 57%
  • Conflict of Interest 44%
  • Organized Financing 41%
  1 Scopus citations

• Erratum: The Immune Landscape of Cancer (Immunity (2018) 48(4) (812–830.e14), (S1074761318301213), (10.1016/j.immuni.2018.03.023))

  The Cancer Genome Atlas Research Network, Aug 20 2019, In: Immunity. 51, 2, p. 411-412 2 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Immunity 100%
  • Names 77%
  • Genes 49%
  • Neoplasms 39%
  • Research Design 32%
  41 Scopus citations
• 2018

  Erratum: Comprehensive Characterization of Cancer Driver Genes and Mutations (ARTICLE (2018) 173(2) (371–385), (S009286741830237X), (10.1016/j.cell.2018.02.060))

  The MC3 Working Group, The Cancer Genome Atlas Research Network, The MC3 Working Group & The Cancer Genome Atlas Research Network lding@wustl.edu, Aug 9 2018, In: Cell. 174, 4, p. 1034-1035 2 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Neoplasm Genes 100%
  • Mutation 77%
  • Adenocarcinoma 72%
  • ethyl-2-methylthio-4-methyl-5-pyrimidine carboxylate 48%
  • Error 34%
  110 Scopus citations

• Erratum: Correction: Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy (eLife (2018) 7 PII: e43237)

  Springer, S. U., Chen, C. H., Rodriguez Pena, M. D. C., Li, L., Douville, C., Wang, Y., Cohen, J. D., Taheri, D., Silliman, N., Schaefer, J., Ptak, J., Dobbyn, L., Papoli, M., Kinde, I., Afsari, B., Tregnago, A. C., Bezerra, S. M., VandenBussche, C., Fujita, K., Ertoy, D., & 20 othersCunha, I. W., Yu, L., Bivalacqua, T., Grollman, A. P., Diaz, L. A., Karchin, R., Danilova, L., Huang, C. Y., Shun, C. T., Turesky, R. J., Yun, B. H., Rosenquist, T. A., Pu, Y. S., Hruban, R. H., Tomasetti, C., Papadopoulos, N., Kinzler, K. W., Vogelstein, B., Dickman, K. G. & Netto, G. J., Nov 12 2018, In: eLife. 7, e43237.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access
  2 Scopus citations

• Erratum: Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma (Cancer Cell (2017) 32(2) (204–220.e15)(S1535610817302957)(10.1016/j.ccell.2017.07.003))

  TCGA Research Network, Jan 8 2018, In: Cancer cell. 33, 1, p. 151 1 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Manuscripts 43%
  • Chromosomes 29%
  • Neoplasms 24%
  26 Scopus citations

• Erratum: The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma (Cell Reports (2018) 23(1) (313–326.e5) (S2211124718304364) (10.1016/j.celrep.2018.03.075))

  The Cancer Genome Atlas Research Network, Jun 19 2018, In: Cell Reports. 23, 12, p. 3698 1 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Atlases 100%
  • Renal Cell Carcinoma 89%
  • Names 88%
  • Emotions 73%
  • Error 69%
  48 Scopus citations

• Evaluation of liquid from the papanicolaou test and other liquid biopsies for the detection of endometrial and ovarian cancers

  Wang, Y., Li, L., Douville, C., Cohen, J. D., Yen, T. T., Kinde, I., Sundfelt, K., Kjær, S. K., Hruban, R. H., Shih, I. M., Wang, T. L., Kurman, R. J., Springer, S., Ptak, J., Popoli, M., Schaefer, J., Silliman, N., Dobbyn, L., Tanner, E. J., Angarita, A., & 17 othersLycke, M., Jochumsen, K., Afsari, B., Danilova, L., Levine, D. A., Jardon, K., Zeng, X., Arseneau, J., Fu, L., Diaz, L. A., Karchin, R., Tomasetti, C., Kinzler, K. W., Vogelstein, B., Fader, A. N., Gilbert, L. & Papadopoulos, N., Aug 1 2018, In: Obstetrical and Gynecological Survey. 73, 8, p. 463-464 2 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access
  2 Scopus citations
• 2017

  Erratum to: Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures [Genome Biology. 17, (2016) (231)] DOI: 10.1186/s13059-016-1092-z

  Şenbabaoglu, Y., Gejman, R. S., Winer, A. G., Liu, M., Van Allen, E. M., de Velasco, G., Miao, D., Ostrovnaya, I., Drill, E., Luna, A., Weinhold, N., Lee, W., Manley, B. J., Khalil, D. N., Kaffenberger, S. D., Chen, Y., Danilova, L., Voss, M. H., Coleman, J. A., Russo, P., & 9 othersReuter, V. E., Chan, T. A., Cheng, E. H., Scheinberg, D. A., Li, M. O., Choueiri, T. K., Hsieh, J. J., Sander, C. & Hakimi, A. A., Mar 1 2017, In: Genome biology. 18, 1, 46.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • renal cell carcinoma 100%
  • tumor 64%
  • Tumor Microenvironment 63%
  • RNA 63%
  • messenger RNA 59%
  3 Scopus citations
• 2016

  Erratum: Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma (Cancer Cell (2016) 29(5) (723–736) (S153561081630160X) (10.1016/j.ccell.2016.04.002))

  The Cancer Genome Atlas Research Network, Aug 8 2016, In: Cancer cell. 30, 2, p. 363 1 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Adrenal Cortex Neoplasms 100%
  • Adrenocortical Carcinoma 81%
  • PubMed 47%
  • Neoplasms 19%
  45 Scopus citations