Justine Debelius

Research output

Research output per year 2014 2016 2017 2018 2021 2023 2023

• 26 Article
• 8 Review article
• 3 Conference contribution
• 2 Chapter
• 5 More
  • 2 Comment/debate
  • 1 Editorial
  • 1 Letter
  • 1 Short survey

Research output per year

Research output per year

Search results

• 2023

  Bacterial gut microbiome differences in adults with ADHD and in children with ADHD on psychostimulant medication

  Stiernborg, M., Debelius, J. W., Yang, L. L., Skott, E., Millischer, V., Giacobini, M. B., Melas, P. A., Boulund, F. & Lavebratt, C., May 2023, In: Brain, Behavior, and Immunity. 110, p. 310-321 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Attention Deficit Disorder with Hyperactivity 100%
  • Bacterial Genes 66%
  • Neurodevelopmental Disorders 57%
  • Child 42%
  • Bacteroides 31%

• Effects of Consuming Fermented Fish (Surströmming) on the Fecal Microflora in Healthy Individuals

  Kallner, A., Debelius, J., Schuppe-Koistinen, I., Pereira, M. & Engstrand, L., Mar 1 2023, In: Journal of Medicinal Food. 26, 3, p. 185-192 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Fishes 100%
  • Microbiota 64%
  • Meals 39%
  • Fermented Foods and Beverages 31%
  • Metagenomics 26%

• Impact of exclusive enteral nutrition on the gut microbiome of children with medical complexity

  Beauchamp-Walters, J., Aleti, G., Herrera, L., Debelius, J., Lima, N., Dalal, P., Hong, S., Knight, R. & Rhee, K. E., Jan 2023, In: Journal of Parenteral and Enteral Nutrition. 47, 1, p. 77-86 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Enteral Nutrition 100%
  • Child 40%
  • Healthy Diet 21%
  • Diet 8%
  • RNA Sequence Analysis 6%

• Oral fungal profiling and risk of nasopharyngeal carcinoma: a population-based case-control study

  Chen, Y., Li, W., Chang, E. T., Debelius, J. W., Manoharan, L., Zheng, Y., Li, Y., Huang, G., Adami, H. O., Knight, R., Cai, Y., Zhang, Z. & Ye, W., Oct 2023, In: EBioMedicine. 96, 104813.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Mycobiome 100%
  • Nasopharyngeal Carcinoma 69%
  • Case-Control Studies 49%
  • Population 23%
  • Dysbiosis 21%

• Oral Microbiota Alteration and Roles in Epstein-Barr Virus Reactivation in Nasopharyngeal Carcinoma

  Liao, Y., Zhang, J. B., Lu, L. X., Jia, Y. J., Zheng, M. Q., Debelius, J. W., He, Y. Q., Wang, T. M., Deng, C. M., Tong, X. T., Xue, W. Q., Cao, L. J., Wu, Z. Y., Yang, D. W., Zheng, X. H., Li, X. Z., Wu, Y. X., Feng, L., Ye, W., Mu, J., & 1 othersJia, W. H., Jan 2023, In: Microbiology Spectrum. 11, 1

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Human gammaherpesvirus 4 100%
  • Nasopharyngeal Carcinoma 84%
  • carcinoma 78%
  • reactivation 77%
  • Human Herpesvirus 4 74%

• The Gut-Brain-Sleep Connection in Older Adults: What Do We Learn From the Microbiome?

  Mueller, N. T., Liu, T., Debelius, J. & Zhao, N., Oct 9 2023, In: The journals of gerontology. Series A, Biological sciences and medical sciences. 78, 10, p. 1933-1934 2 p.

  Research output: Contribution to journal › Editorial › peer-review

  Open Access

• The gut microbiome and asthma in a Swedish twin study

  Mubanga, M., Ploner, A., Schuppe-Koistinen, I., Magnusson, P. K. E., Boulund, F., Debelius, J. W. & Almqvist, C., Nov 2023, In: Clinical and Experimental Allergy. 53, 11, p. 1212-1215 4 p.

  Research output: Contribution to journal › Letter › peer-review

  Open Access

• The Local Tumor Microbiome Is Associated with Survival in Late-Stage Colorectal Cancer Patients

  Debelius, J. W., Engstrand, L., Matussek, A., Brusselaers, N., Morton, J. T., Stenmarker, M. & Olsen, R. S., May 2023, In: Microbiology Spectrum. 11, 3

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • colorectal neoplasms 100%
  • tumor 85%
  • Microbiota 81%
  • microbiome 79%
  • cancer 76%
• 2022

  Influence of Pre-treatment Saliva Microbial Diversity and Composition on Nasopharyngeal Carcinoma Prognosis

  Du, Y., Feng, R., Chang, E. T., Debelius, J. W., Yin, L., Xu, M., Huang, T., Zhou, X., Xiao, X., Li, Y., Liao, J., Zheng, Y., Huang, G., Adami, H. O., Zhang, Z., Cai, Y. & Ye, W., Mar 22 2022, In: Frontiers in Cellular and Infection Microbiology. 12, 831409.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Nasopharyngeal Carcinoma 100%
  • Mortality 44%
  • Microbiota 43%
  • Confidence Intervals 31%
  • Therapeutics 14%

• The vaginal microbiome and the risk of preterm birth: a systematic review and network meta-analysis

  Gudnadottir, U., Debelius, J. W., Du, J., Hugerth, L. W., Danielsson, H., Schuppe-Koistinen, I., Fransson, E. & Brusselaers, N., Dec 2022, In: Scientific reports. 12, 1, 7926.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Network Meta-Analysis 100%
  • Premature Birth 78%
  • Microbiota 73%
  • Lactobacillus 56%
  • Systematic Reviews 54%
• 2021

  Association of gut microbiota during early pregnancy with risk of incident gestational diabetes mellitus

  Hu, P., Chen, X., Chu, X., Fan, M., Ye, Y., Wang, Y., Han, M., Yang, X., Yuan, J., Zha, L., Zhao, B., Yang, C. X., Qi, X. R., Ning, K., Debelius, J., Ye, W., Xiong, B., Pan, X. F. & Pan, A., Oct 1 2021, In: Journal of Clinical Endocrinology and Metabolism. 106, 10, p. E4128-E4141

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Gestational Diabetes 100%
  • Glucose 65%
  • Pregnancy 53%
  • Biological Marker 26%
  • Veillonellaceae 20%

• Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops

  Dillon, M. R., Bolyen, E., Adamov, A., Belk, A., Borsom, E., Burcham, Z., Debelius, J. W., Deel, H., Emmons, A., Estaki, M., Herman, C., Keefe, C. R., Morton, J. T., Oliveira, R. R. M., Sanchez, A., Simard, A., Vázquez-Baeza, Y., Ziemski, M., Miwa, H. E., Kerere, T. A., & 11 othersCoote, C., Bonneau, R., Knight, R., Oliveira, G., Gopalasingam, P., Kaehler, B. D., Cope, E. K., Metcalf, J. L., Robeson, M. S., Bokulich, N. A. & Gregory Caporaso, J., Jun 2021, In: PLoS computational biology. 17, 6, e1009056.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Coronavirinae 100%
  • pandemic 97%
  • teachers 95%
  • Bioinformatics 93%
  • bioinformatics 93%

• Gut microbiome and amyotrophic lateral sclerosis: A systematic review of current evidence

  Sun, J., Huang, T., Debelius, J. W. & Fang, F., Oct 2021, In: Journal of Internal Medicine. 290, 4, p. 758-788 31 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Amyotrophic Lateral Sclerosis 100%
  • Systematic Reviews 68%
  • Animals 17%
  • Publication Bias 13%
  • Microbiota 11%

• Hurt, Comfort and Intimacy: Representations of Diabetes in Fan Fiction

  Debelius, J., 2021, Palgrave Studies in Science and Popular Culture. Palgrave Macmillan, p. 257-273 17 p. (Palgrave Studies in Science and Popular Culture; vol. Part F2117).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Intimacy 100%
  • Diabetes 99%
  • Fiction 93%
  • Medical problems 84%
  • fan 81%

• Menopausal hormone therapies and risk of colorectal cancer: a Swedish matched-cohort study

  Liu, Q., Simin, J., Debelius, J., Fall, K., Sadr-Azodi, O., Engstrand, L., Williams, C. & Brusselaers, N., Jun 2021, In: Alimentary Pharmacology and Therapeutics. 53, 11, p. 1216-1225 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Colorectal Neoplasms 100%
  • Hormones 88%
  • Cohort Studies 85%
  • Odds Ratio 52%
  • Confidence Intervals 48%

• Radiation Therapy–Induced Changes of the Nasopharyngeal Commensal Microbiome in Nasopharyngeal Carcinoma Patients

  Huang, T., Debelius, J. W., Ploner, A., Xiao, X., Zhang, T., Hu, K., Zhang, Z., Wang, R. & Ye, W., Jan 1 2021, In: International Journal of Radiation Oncology Biology Physics. 109, 1, p. 145-150 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Nasopharyngeal Carcinoma 100%
  • radiation therapy 88%
  • Microbiota 87%
  • cancer 82%
  • Radiation 66%
• 2020

  A gut bacterial amyloid promotes a-synuclein aggregation and motor impairment in mice

  Sampson, T. R., Challis, C., Jain, N., Moiseyenko, A., Ladinsky, M. S., Shastri, G. G., Thron, T., Needham, B. D., Horvath, I., Debelius, J. W., Janssen, S., Knight, R., Wittung-Stafshede, P., Gradinaru, V., Chapman, M. & Mazmanian, S. K., Feb 2020, In: eLife. 9, e53111.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Synucleins 100%
  • Amyloid 62%
  • Amyloidogenic Proteins 37%
  • Protein 27%
  • Escherichia coli 13%

• Detection of sparse and weak effects in high-dimensional feature space, with an application to microbiome data analysis

  Pavlenko, T., Tillander, A., Debelius, J. & Boulund, F., Sep 17 2020, Recent Developments in Multivariate and Random Matrix Analysis: Festschrift in Honour of Dietrich von Rosen. Springer International Publishing, p. 287-311 25 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Feature Space 100%
  • Microbiota 72%
  • Data analysis 66%
  • High-dimensional 59%
  • Test Statistic 58%

• Subspecies niche specialization in the oral microbiome is associated with nasopharyngeal carcinoma risk

  Debelius, J. W., Huang, T., Cai, Y., Ploner, A., Barrett, D., Zhou, X., Xiao, X., Li, Y., Liao, J., Zheng, Y., Huang, G., Adami, H. O., Zeng, Y., Zhang, Z. & Yea, W., Aug 2020, In: mSystems. 5, 4, e00065-20.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Niche 100%
  • Microorganisms 82%
  • subspecies 81%
  • Nasopharyngeal Carcinoma 78%
  • oral health 77%
• 2019

  Disease-modifying therapies alter gut microbial composition in MS

  Katz Sand, I., Zhu, Y., Ntranos, A., Clemente, J. C., Cekanaviciute, E., Brandstadter, R., Crabtree-Hartman, E., Singh, S., Bencosme, Y., Debelius, J., Knight, R., Cree, B. A. C., Baranzini, S. E. & Casaccia, P., Jan 1 2019, In: Neurology: Neuroimmunology and NeuroInflammation. 6, 1, e517.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Dimethyl Fumarate 100%
  • Veillonellaceae 24%
  • Clostridiales 21%
  • Fusobacteria 20%
  • Bacteroidetes 17%

• Personalized Nutrition in Disrupting Cancer — Proceedings From the 2017 American College of Nutrition Annual Meeting

  Wallace, T. C., Bultman, S., D’Adamo, C., Daniel, C. R., Debelius, J., Ho, E., Eliassen, H., Lemanne, D., Mukherjee, P., Seyfried, T. N., Tian, Q. & Vahdat, L. T., Jan 2 2019, In: Journal of the American College of Nutrition. 38, 1, p. 1-14 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Neoplasms 100%
  • 3-hydroxy-5-estrane-17-carbonitrile 62%
  • Anniversaries and Special Events 43%
  • Manuscripts 39%
  • Sedentary Behavior 37%
• 2018

  American Gut: An open platform for citizen science microbiome research

  American Gut Consortium, Jun 2018, In: mSystems. 3, 3, e00031-18.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Citizen Science 100%
  • Microorganisms 63%
  • Microbiota 52%
  • microbiome 51%
  • citizen 50%

• Best practices for analysing microbiomes

  Knight, R., Vrbanac, A., Taylor, B. C., Aksenov, A., Callewaert, C., Debelius, J., Gonzalez, A., Kosciolek, T., McCall, L. I., McDonald, D., Melnik, A. V., Morton, J. T., Navas, J., Quinn, R. A., Sanders, J. G., Swafford, A. D., Thompson, L. R., Tripathi, A., Xu, Z. Z., Zaneveld, J. R., & 3 othersZhu, Q., Caporaso, J. G. & Dorrestein, P. C., Jul 1 2018, In: Nature Reviews Microbiology. 16, 7, p. 410-422 13 p.

  Research output: Contribution to journal › Review article › peer-review

  • Microbiota 100%
  • Practice Guidelines 94%
  • Data Analysis 56%
  • Research Design 40%
  • Datasets 39%

• Docent: Transforming personal intuitions to scientific hypotheses through content learning and process training

  Pandey, V., Debelius, J., Hyde, E. R., Kosciolek, T., Knight, R. & Klemmer, S., Jun 26 2018, Proceedings of the 5th Annual ACM Conference on Learning at Scale, L at S 2018. Association for Computing Machinery, Inc, 9. (Proceedings of the 5th Annual ACM Conference on Learning at Scale, L at S 2018).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Microorganisms 100%
  • intuition 89%
  • learning 28%
  • Learning systems 28%
  • workflow 22%

• Erratum to: The gut–liver axis and the intersection with the microbiome (Nature Reviews Gastroenterology & Hepatology, (2018), 15, 7, (397-411), 10.1038/s41575-018-0011-z)

  Tripathi, A., Debelius, J., Brenner, D. A., Karin, M., Loomba, R., Schnabl, B. & Knight, R., Dec 1 2018, In: Nature Reviews Gastroenterology and Hepatology. 15, 12, p. 785 1 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Pathogen-Associated Molecular Pattern Molecules 100%
  • Alcoholic Liver Diseases 93%
  • Gastroenterology 83%
  • Non-alcoholic Fatty Liver Disease 79%
  • Microbiota 73%

• Impacts of the Human Gut Microbiome on Therapeutics

  Vázquez-Baeza, Y., Callewaert, C., Debelius, J., Hyde, E., Marotz, C., Morton, J. T., Swafford, A., Vrbanac, A., Dorrestein, P. C. & Knight, R., Jan 6 2018, In: Annual Review of Pharmacology and Toxicology. 58, p. 253-270 18 p.

  Research output: Contribution to journal › Review article › peer-review

  • Cardiac Glycoside 100%
  • Nonsteroid Antiinflammatory Agent 78%
  • Microbiota 67%
  • Antineoplastic Agent 60%
  • Drug 35%

• The gut-liver axis and the intersection with the microbiome

  Tripathi, A., Debelius, J., Brenner, D. A., Karin, M., Loomba, R., Schnabl, B. & Knight, R., Jul 1 2018, In: Nature Reviews Gastroenterology and Hepatology. 15, 7, p. 397-411 15 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Microbiota 100%
  • Liver 52%
  • Liver Diseases 42%
  • Alcoholic Fatty Liver 37%
  • Non-alcoholic Fatty Liver Disease 27%
• 2017

  An Elegan(t) Screen for Drug-Microbe Interactions

  Vrbanac, A., Debelius, J. W., Jiang, L., Morton, J. T., Dorrestein, P. & Knight, R., May 10 2017, In: Cell Host and Microbe. 21, 5, p. 555-556 2 p.

  Research output: Contribution to journal › Short survey › peer-review

  Open Access

  • Drug Interactions 100%
  • drugs 68%
  • microorganisms 66%
  • antineoplastic agents 59%
  • pharmacokinetics 50%

• Correcting for microbial blooms in fecal samples during room-temperature shipping

  Amir, A., McDonald, D., Navas-Molina, J. A., Debelius, J., Morton, J. T., Hyde, E., Robbins-Pianka, A. & Knight, R., Mar 1 2017, In: mSystems. 2, 2, e00199.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • shipping 100%
  • Microorganisms 98%
  • Freight transportation 88%
  • Microbiota 82%
  • microbiome 80%

• Erratum: Gut bacteria from multiple sclerosis patients modulate human T cells and exacerbate symptoms in mouse models (Proc Natl Acad Sci USA (2017) 114 (10713–10718) DOI: 10.1073/pnas.1711235114)

  Cekanaviciute, E., Yoo, B. B., Runia, T. F., Debelius, J. W., Singh, S., Nelson, C. A., Kanner, R., Bencosme, Y., Lee, Y. K., Hauser, S. L., Crabtree-Hartman, E., Sand, I. K., Gacias, M., Zhu, Y., Casaccia, P., Cree, B. A. C., Knight, R., Mazmanian, S. K. & Baranzini, S. E., Oct 17 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 42, p. E8943

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • sclerosis 100%
  • signs and symptoms (animals and humans) 67%
  • T-lymphocytes 67%
  • animal models 64%
  • sand 61%

• Gut bacteria from multiple sclerosis patients modulate human T cells and exacerbate symptoms in mouse models

  Cekanaviciute, E., Yoo, B. B., Runia, T. F., Debelius, J. W., Singh, S., Nelson, C. A., Kanner, R., Bencosme, Y., Lee, Y. K., Hauser, S. L., Crabtree-Hartman, E., Sand, I. K., Gacias, M., Zhu, Y., Casaccia, P., Cree, B. A. C., Knight, R., Mazmanian, S. K. & Baranzini, S. E., Oct 3 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 40, p. 10713-10718 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Multiple Sclerosis 100%
  • Microbiota 80%
  • Bacteria 76%
  • T-Lymphocytes 70%
  • Interleukin-10 28%

• Gut instinct: Creating scientific theories with online learners

  Pandey, V., Amir, A., Debelius, J., Hyde, E. R., Kosciolek, T., Knight, R. & Klemmer, S., May 2 2017, CHI 2017 - Proceedings of the 2017 ACM SIGCHI Conference on Human Factors in Computing Systems: Explore, Innovate, Inspire. Association for Computing Machinery, p. 6825-6836 12 p. (Conference on Human Factors in Computing Systems - Proceedings; vol. 2017-May).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Microorganisms 100%
  • Testing 42%
  • Experiments 29%

• Intestinal adaptation in proximal and distal segments: Two epithelial responses diverge after intestinal separation

  Schall, K. A., Holoyda, K. A., Isani, M., Schlieve, C., Salisbury, T., Khuu, T., Debelius, J. W., Moats, R. A., Pollack, H. A., Lien, C. L., Fowler, K., Hou, X., Knight, R. & Grikscheit, T. C., Apr 1 2017, In: Surgery (United States). 161, 4, p. 1016-1027 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Catenins 100%
  • Short Bowel Syndrome 92%
  • Intestines 92%
  • Zebrafish 34%
  • Bromodeoxyuridine 24%

• Parkinson's disease and Parkinson's disease medications have distinct signatures of the gut microbiome

  Hill-Burns, E. M., Debelius, J. W., Morton, J. T., Wissemann, W. T., Lewis, M. R., Wallen, Z. D., Peddada, S. D., Factor, S. A., Molho, E., Zabetian, C. P., Knight, R. & Payami, H., May 2017, In: Movement Disorders. 32, 5, p. 739-749 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Parkinson Disease 84%
  • Dysbiosis 47%
  • Lactobacillaceae 22%
  • Pasteurellaceae 21%
  • Catechol O-Methyltransferase Inhibitors 20%

• The Microbiome and Human Biology

  Knight, R., Callewaert, C., Marotz, C., Hyde, E. R., Debelius, J. W., McDonald, D. & Sogin, M. L., Aug 31 2017, In: Annual Review of Genomics and Human Genetics. 18, p. 65-86 22 p.

  Research output: Contribution to journal › Article › peer-review

  • Microbiota 100%
  • Metabolome 57%
  • Autistic Disorder 50%
  • Inflammatory Bowel Diseases 47%
  • Digestion 46%
• 2016

  Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Disease

  Sampson, T. R., Debelius, J. W., Thron, T., Janssen, S., Shastri, G. G., Ilhan, Z. E., Challis, C., Schretter, C. E., Rocha, S., Gradinaru, V., Chesselet, M. F., Keshavarzian, A., Shannon, K. M., Krajmalnik-Brown, R., Wittung-Stafshede, P., Knight, R. & Mazmanian, S. K., Dec 1 2016, In: Cell. 167, 6, p. 1469-1480.e12

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Synucleins 100%
  • Disorder 56%
  • Parkinson Disease 55%
  • Microbiota 48%
  • Synucleinopathies 23%

• Heritable components of the human fecal microbiome are associated with visceral fat

  Beaumont, M., Goodrich, J. K., Jackson, M. A., Yet, I., Davenport, E. R., Vieira-Silva, S., Debelius, J., Pallister, T., Mangino, M., Raes, J., Knight, R., Clark, A. G., Ley, R. E., Spector, T. D. & Bell, J. T., Sep 26 2016, In: Genome biology. 17, 1, 189.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • obesity 92%
  • adiposity 90%
  • Intra-Abdominal Fat 78%
  • Adiposity 72%
  • fat 71%

• Microbiome-wide association studies link dynamic microbial consortia to disease

  Gilbert, J. A., Quinn, R. A., Debelius, J., Xu, Z. Z., Morton, J., Garg, N., Jansson, J. K., Dorrestein, P. C. & Knight, R., Jul 6 2016, In: Nature. 535, 7610, p. 94-103 10 p.

  Research output: Contribution to journal › Review article › peer-review

  • Microbial Consortia 100%
  • Microbiota 59%
  • Metabolomics 13%
  • Genome-Wide Association Study 12%
  • DNA Sequence Analysis 12%

• The pediatric intestinal mucosal microbiome remains altered after clinical resolution of inflammatory and ischemic disease

  Wieck, M. M., Debelius, J. W., Spurrier, R. G., Trecartin, A., Knight, R. & Grikscheit, T. C., Aug 1 2016, In: Surgery (United States). 160, 2, p. 350-358 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Anti-Bacterial Agents 66%
  • Pediatrics 65%
  • Intestines 45%
  • Clostridiaceae 45%
  • Intestinal Perforation 35%

• Tiny microbes, enormous impacts: What matters in gut microbiome studies?

  Debelius, J., Song, S. J., Vazquez-Baeza, Y., Xu, Z. Z., Gonzalez, A. & Knight, R., Oct 19 2016, In: Genome biology. 17, 1, 217.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Microbiota 100%
  • microbiome 98%
  • digestive system 82%
  • microorganisms 66%
  • meta-analysis 57%

• Using machine learning to identify major shifts in human gut microbiome protein family abundance in disease

  Yazdani, M., Taylor, B. C., Debelius, J. W., Li, W., Knight, R. & Smarr, L., 2016, Proceedings - 2016 IEEE International Conference on Big Data, Big Data 2016. Ak, R., Karypis, G., Xia, Y., Hu, X. T., Yu, P. S., Joshi, J., Ungar, L., Liu, L., Sato, A-H., Suzumura, T., Rachuri, S., Govindaraju, R. & Xu, W. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1272-1280 9 p. 7840731. (Proceedings - 2016 IEEE International Conference on Big Data, Big Data 2016).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Microorganisms 100%
  • Proteins 76%
  • Machine learning 61%
  • Classifiers 23%
  • Random forests 17%
• 2015

  Microbial endocrinology: The interplay between the microbiota and the endocrine system

  Neuman, H., Debelius, J. W., Knight, R. & Koren, O., Jul 2015, In: FEMS Microbiology Reviews. 39, 4, p. 509-521 13 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Endocrine System 100%
  • Endocrinology 97%
  • Microbiota 81%
  • Hormones 57%
  • Immunity 22%
• 2014

  HLA-B27 and human β2-microglobulin affect the gut microbiota of transgenic rats

  Lin, P., Bach, M., Asquith, M., Lee, A. Y., Akileswaran, L., Stauffer, P., Davin, S., Pan, Y., Cambronne, E. D., Dorris, M., Debelius, J. W., Lauber, C. L., Ackermann, G., Baeza, Y. V., Gill, T., Knight, R., Colbert, R. A., Taurog, J. D., Van Gelder, R. N. & Rosenbaum, J. T., Aug 20 2014, In: PloS one. 9, 8, e105684.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Transgenic Rats 100%
  • HLA-B27 Antigen 96%
  • Karyotyping 31%
  • Genetically Modified Animals 30%
  • Wild Animals 30%

• Specialized metabolites from the microbiome in health and disease

  Sharon, G., Garg, N., Debelius, J., Knight, R., Dorrestein, P. C. & Mazmanian, S. K., Nov 4 2014, In: Cell Metabolism. 20, 5, p. 719-730 12 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Microbiota 100%
  • Health 49%
  • Physiological Absorption 34%
  • Host Microbial Interactions 31%
  • Dysbiosis 31%