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Jeff Gray

Professor

1991 …2026

Research activity per year

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  • A blinded, prospective benchmark of in silico antibody discovery anchored to experimental affinity and developability

    Erasmus, M. F., Bedinger, D., Hopkins, E., Ferguson, G., Strickler, J., Graff, C. P., Summers, S. R., Capehart, S. L., Slocum, J. D., Richardson, C., Kumar, S., Sun, Z., Shang, Y., Zhang, J., Gu, M., Yi, L., Wellner, A., Zheng, S., Lu, W. & Sormanni, P. & 97 others, Greenig, M., Zhang, H., Mann, B. T., Baghbanzadeh, M., Rahnavard, A., Moore, G. L., Sun, H., Ding, Y., Nisthal, A., Kanodia, J., Bernett, M. J., Pélissier, A., Shao, Y., Rodriguez Martinez, M., Ramesh, K., Nastri, H., Evers, A., Abdelatif, A., Bordner, A. J., Bordyuh, M., Heo, L., Kidd, B. A., Serhat Tetikol, H., Wei, S., Shin, J. E., Peckner, R., Manley, L., Lunge, A., Devasurmutt, Y., Guloglu, B., Copoiu, L., McGibbon, M., Fernandez-Quintero, M. L., Mishra, N., Callaghan, S. M., Swanson, O. M., Bader, D. L. V., Ferguson, J. A., Raghavan, S. S. R., Nemoz, B., Maillie, C. A., Bowman, C., Briney, B., Ward, A. B., Marcatili, P., Akbar, R., He, B., Wu, F., Yao, J., Hu, B., Kucer, M., Gibson, K. R., Somasundaram, R., Hung, L. W., Kaszuba, T., Fremont, D. H., Jeong, H., Kurella, V. B., Malhotra, S., Kumar, S., Liu, Y., Xu, L., Misa, J., John, A. N. S., Vogt, J., Dávila-Hernández, F. A., Xu, D., Chungyoun, M., Huggan, Z. D., Gray, J. J., Parkinson, J., Ko, Y. S., Wang, W., Geiger, F., Ziegler, J. D., Haas, N., Challacombe, C., Qamar, A., Singh, A., Tang, Y. C., An, Z., Jiang, X., Kim, Y., Zhao, X., Swanson, E., Klattig, J., Winkler, K., Bataa, T., Sandig, V., Denzler, L., Liu, C., Brezski, R. J., Spector, L., Perea-Schmittle, K., D’Angelo, S., Ferrara, F. & Bradbury, A. R. M., 2026, (Accepted/In press) In: Nature Biotechnology.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Predictions from deep learning propose substantial protein–carbohydrate interplay

    Canner, S. W., Schnaar, R. L. & Gray, J. J., May 26 2026, In: Proceedings of the National Academy of Sciences of the United States of America. 123, 21, e2523342123.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Protein engineering: status report

    Ai, H. W., Arnold, F. H., Barrick, D., Bayley, H., Brownless, A. L. R., Campbell, R. E., Castells-Graells, R., Chaiyen, P., Chica, R. A., Chisholm, L. O., Christ, D., Chu, G. C., Chungyoun, M., Eijsink, V. G. H., Elowitz, M. B., Fansher, D. J., Fasan, R., Foley, G., Frei, M. S. & Gagsteiger, A. & 61 others, Gao, R., Gillam, E. M. J., Gray, J. J., Guerra, L. F., Höcker, B., Jin, Z., Kamerlin, S. C. L., Koga, N., Kontermann, R. E., Kuhlman, B., Langlois, O. A., Li, D., Lins, R. D., Liu, C. C., Liu, L., López Barreiro, D., Lu, P., Mehta, S., Miyazaki, I., Müller, M. M., Muyldermans, S., Nemoto, N., Nivala, J., Nuñez, J. K., Ornelas, I. J., Pelletier, J. N., Plückthun, A., Porth, O. T., Prakinee, K., Qing, Y., Reisenbauer, J. C., Schmidt, S., Seifert, O., Shapiro, M. G., Sharma, R., Singh, N., Smith, B. J., Spangler, J. B., Tatsumi-Koga, R., Terai, T., Terholsen, H., Tolhurst, M., Tripp, K. W., Trossmann, V. T., Tucker, C. L., Turak, O., Van Deventer, J. A., Várnai, A., Viana, I. F. T., Weeks, A. M., Wittrup, K. D., Wong, K. L. J., Xi, C., Yeates, T. O., Yeh, A. H. W., Zhang, J., Zhang, T. S., Zhao, H., Zheng, F., Zhu, J. & Zinn, S., Jan 1 2026, In: Protein Engineering, Design and Selection. 39, gzag020.

    Research output: Contribution to journal › Review article › peer-review

    Open Access

  • The Open Molecular Software Foundation (OMSF) and the Growing Role of Open Source Software in Molecular Modeling

    Čondić-Jurkić, K., Alibay, I., Sherman, W., Tollefson, M. R., Walters, W. P., Baker, Z., Chong, L. T., Wei, J. N., Gray, J., Weitzner, B. D., Smith, D. G. A., Koehler Leman, J., Bahl, C. & Mobley, D. L., Mar 23 2026, In: Journal of Chemical Information and Modeling. 66, 6, p. 2967-2984 18 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access

  • Unified Sampling and Ranking for Protein Docking With DFMDock

    Chu, L. S., Sarma, S., Xu, D. & Gray, J. J., 2026, (Accepted/In press) In: Proteins: Structure, Function and Bioinformatics.

    Research output: Contribution to journal › Article › peer-review

View all 176 Research outputs