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Christopher Chute

Professor

1985 …2024

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  • 2023

    Investigating the Impact of Temporal Labeling of Emergency Department Visits for COVID-19: Comparing Healthcare Disparities Analyses Using Comprehensive, Single-Site Data with National COVID Cohort Collaborative (N3C) Data

    Jones, M., Winger, A., Wernz, C., Michel, J., Jiang, S., Zhou, A., Hilton, E. J., Zemmel, M., Sengupta, S., Barnes, K., Loomba, J., Brown, D. E., Wilcox, A. B., Lee, A. M., Graves, A., Anzalone, A., Manna, A., Saha, A., Olex, A., Williams, A. E., & 116 othersSoutherland, A., Girvin, A. T., Walden, A., Sharathkumar, A. A., Amor, B., Bates, B., Hendricks, B., Patel, B., Alexander, C., Bramante, C., Ward-Caviness, C., Madlock-Brown, C., Suver, C., Chute, C., Dillon, C., Wu, C., Schmitt, C., Takemoto, C., Housman, D., Gabriel, D., Eichmann, D. A., Mazzotti, D., Boudreau, E., Hill, E., Zampino, E., Marti, E. C., Pfaff, E. R., French, E., Koraishy, F. M., Mariona, F., Prior, F., Sokos, G., Martin, G., Lehmann, H., Spratt, H., Mehta, H., Liu, H., Sidky, H., Awori Hayanga, J. W., Pincavitch, J., Clark, J., Richard Harper, J., Islam, J., Ge, J., Gagnier, J., Saltz, J. H., Buse, J., Mathew, J., Rutter, J. L., McMurry, J. A., Guinney, J., Starren, J., Crowley, K., Bradwell, K. R., Walters, K. M., Wilkins, K., Gersing, K. R., Cato, K. D., Murray, K., Kostka, K., Northington, L., Pyles, L. A., Misquitta, L., Cottrell, L., Portilla, L., Deacy, M., Bissell, M. M., Clark, M., Emmett, M., Saltz, M. M., Palchuk, M. B., Haendel, M. A., Adams, M., Temple-O'Connor, M., Kurilla, M. G., Morris, M., Qureshi, N., Safdar, N., Garbarini, N., Sharafeldin, N., Sadan, O., Francis, P. A., Burgoon, P. W., Robinson, P., Payne, P. R. O., Fuentes, R., Jawa, R., Erwin-Cohen, R., Patel, R., Moffitt, R. A., Zhu, R. L., Kamaleswaran, R., Hurley, R., Miller, R. T., Pyarajan, S., Michael, S. G., Bozzette, S., Mallipattu, S., Vedula, S., Chapman, S., O'Neil, S. T., Setoguchi, S., Hong, S. S., Johnson, S., Bennett, T. D., Callahan, T., Topaloglu, U., Sheikh, U., Gordon, V., Subbian, V., Kibbe, W. A., Hernandez, W., Beasley, W., Cooper, W., Hillegass, W. & Zhang, X. T., 2023, 2023 Systems and Information Engineering Design Symposium, SIEDS 2023. Institute of Electrical and Electronics Engineers Inc., p. 297-302 6 p. (2023 Systems and Information Engineering Design Symposium, SIEDS 2023).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • 2022

    Analyzing historical diagnosis code data from NIH N3C and RECOVER Programs using deep learning to determine risk factors for Long Covid

    Sengupta, S., Loomba, J., Sharma, S., Brown, D. E., Thorpe, L., Haendel, M. A., Chute, C. G. & Hong, S., 2022, Proceedings - 2022 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2022. Adjeroh, D., Long, Q., Shi, X., Guo, F., Hu, X., Aluru, S., Narasimhan, G., Wang, J., Kang, M., Mondal, A. M. & Liu, J. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 2797-2802 6 p. (Proceedings - 2022 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2022).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
  • 2020

    Alignflow: Cycle consistent learning from multiple domains via normalizing flows

    Grover, A., Chute, C., Shu, R., Cao, Z. & Ermon, S., 2020, AAAI 2020 - 34th AAAI Conference on Artificial Intelligence. AAAI Press, p. 4028-4035 8 p. (AAAI 2020 - 34th AAAI Conference on Artificial Intelligence).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    3 Scopus citations

  • Toward a harmonized WHO family of international classifications content model

    Tu, S. W., Nyulas, C. I., Tudorache, T., Musen, M. A., Martinuzzi, A., van Gool, C., della Mea, V., Chute, C. G., Frattura, L., Hardiker, N., Ten Napel, H., Madden, R., Almborg, A. H., Ginige, J. A., Sykes, C., Cekik, C. & Jakob, R., Jun 16 2020, Digital Personalized Health and Medicine - Proceedings of MIE 2020. Pape-Haugaard, L. B., Lovis, C., Madsen, I. C., Weber, P., Nielsen, P. H. & Scott, P. (eds.). IOS Press, p. 1409-1410 2 p. (Studies in Health Technology and Informatics; vol. 270).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    2 Scopus citations
  • 2019

    Characterizing Design Patterns of EHR-Driven Phenotype Extraction Algorithms

    Zhong, Y., Rasmussen, L., Deng, Y., Pacheco, J., Smith, M., Starren, J., Wei, W. Q., Speltz, P., Denny, J., Walton, N., Hripcsak, G., Chute, C. G. & Luo, Y., Jan 21 2019, Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018. Schmidt, H., Griol, D., Wang, H., Baumbach, J., Zheng, H., Callejas, Z., Hu, X., Dickerson, J. & Zhang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1143-1146 4 p. 8621240. (Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • CheXpert: A large chest radiograph dataset with uncertainty labels and expert comparison

    Irvin, J., Rajpurkar, P., Ko, M., Yu, Y., Ciurea-Ilcus, S., Chute, C., Marklund, H., Haghgoo, B., Ball, R., Shpanskaya, K., Seekins, J., Mong, D. A., Halabi, S. S., Sandberg, J. K., Jones, R., Larson, D. B., Langlotz, C. P., Patel, B. N., Lungren, M. P. & Ng, A. Y., 2019, 33rd AAAI Conference on Artificial Intelligence, AAAI 2019, 31st Innovative Applications of Artificial Intelligence Conference, IAAI 2019 and the 9th AAAI Symposium on Educational Advances in Artificial Intelligence, EAAI 2019. AAAI Press, p. 590-597 8 p. (33rd AAAI Conference on Artificial Intelligence, AAAI 2019, 31st Innovative Applications of Artificial Intelligence Conference, IAAI 2019 and the 9th AAAI Symposium on Educational Advances in Artificial Intelligence, EAAI 2019).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    160 Scopus citations
  • 2017

    Interface terminologies, reference terminologies and aggregation terminologies: A strategy for better integration

    Schulz, S., Rodrigues, J. M., Rector, A. & Chute, C. G., 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. Dongsheng, Z., Gundlapalli, A. V. & Marie-Christine, J. (eds.). IOS Press, p. 940-944 5 p. (Studies in Health Technology and Informatics; vol. 245).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    19 Scopus citations

  • The pluripotent rendering of clinical data for precision medicine

    Chute, C. G. & Huff, S. M., 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. Dongsheng, Z., Gundlapalli, A. V. & Marie-Christine, J. (eds.). IOS Press, p. 337-340 4 p. (Studies in Health Technology and Informatics; vol. 245).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    3 Scopus citations
  • 2015

    A Pilot Study on Modeling of Diagnostic Criteria Using OWL and SWRL

    Hong, N., Jiang, G., Pathak, J. & Chute, C. G., 2015, MEDINFO 2015: eHealth-Enabled Health - Proceedings of the 15th World Congress on Health and Biomedical Informatics. Georgiou, A., Sarkar, I. N. & de Azevedo Marques, P. M. (eds.). IOS Press, p. 1093 1 p. (Studies in Health Technology and Informatics; vol. 216).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • A Standards-based Semantic Metadata Repository to Support EHR-driven Phenotype Authoring and Execution

    Jiang, G., Solbrig, H. R., Kiefer, R., Rasmussen, L. V., Mo, H., Speltz, P., Thompson, W. K., Denny, J. C., Chute, C. G. & Pathak, J., 2015, MEDINFO 2015: eHealth-Enabled Health - Proceedings of the 15th World Congress on Health and Biomedical Informatics. Georgiou, A., Sarkar, I. N. & de Azevedo Marques, P. M. (eds.). IOS Press, p. 1098 1 p. (Studies in Health Technology and Informatics; vol. 216).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    4 Scopus citations

  • Developing a Standards-Based Information Model for Representing Computable Diagnostic Criteria: A Feasibility Study of the NQF Quality Data Model

    Jiang, G., Solbrig, H. R., Pathak, J. & Chute, C. G., 2015, MEDINFO 2015: eHealth-Enabled Health - Proceedings of the 15th World Congress on Health and Biomedical Informatics. Georgiou, A., Sarkar, I. N. & de Azevedo Marques, P. M. (eds.). IOS Press, p. 1097 1 p. (Studies in Health Technology and Informatics; vol. 216).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    2 Scopus citations

  • Representing Clinical Diagnostic Criteria in Quality Data Model Using Natural Language Processing

    Hong, N., Li, D., Yu, Y., Liu, H., Chute, C. G. & Jiang, G., 2015, ACL-IJCNLP 2015 - BioNLP 2015: Workshop on Biomedical Natural Language Processing, Proceedings of the Workshop. Association for Computational Linguistics (ACL), p. 177-182 6 p. (ACL-IJCNLP 2015 - BioNLP 2015: Workshop on Biomedical Natural Language Processing, Proceedings of the Workshop).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Semantic Alignment between ICD-11 and SNOMED CT

    Rodrigues, J. M., Robinson, D., Della Mea, V., Campbell, J., Rector, A., Schulz, S., Brear, H., Üstün, B., Spackman, K., Chute, C. G., Millar, J., Solbrig, H. & Brand Persson, K., 2015, MEDINFO 2015: eHealth-Enabled Health - Proceedings of the 15th World Congress on Health and Biomedical Informatics. Georgiou, A., Sarkar, I. N. & de Azevedo Marques, P. M. (eds.). IOS Press, p. 790-794 5 p. (Studies in Health Technology and Informatics; vol. 216).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    13 Scopus citations
  • 2014

    A formal model for RDF dataset constraints

    Solbrig, H., Prud'Hommeaux, E., Chute, C. G. & Davies, J., 2014, Semantic Technology - Third Joint International Conference, JIST 2013, Revised Selected Papers. Springer Verlag, p. 244-260 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8388 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • A web-based tool for development of a common ontology between ICD11 and SNOMED-CT

    Mea, V. D., Vuattolo, O., Ustun, B. T., Rector, A., Schulz, S., Rodrigues, J. M., Spackman, K., Robinson, D., Millar, J., Campbell, J. R., Chute, C. G., Solbrig, H. R. & Persson, K. B., Mar 2 2014, Proceedings - 2014 IEEE International Conference on Healthcare Informatics, ICHI 2014. Institute of Electrical and Electronics Engineers Inc., p. 144-148 5 p. 7052481. (Proceedings - 2014 IEEE International Conference on Healthcare Informatics, ICHI 2014).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    2 Scopus citations

  • Cancer based pharmacogenomics network for drug repurposing

    Wang, L., Liu, H., Chute, C. G. & Zhu, Q., 2014, Trends and Applications in Knowledge Discovery and Data Mining - PAKDD 2014 International Workshops: DANTH, BDM, MobiSocial, BigEC, CloudSD, MSMV-MBI, SDA, DMDA-Health, ALSIP, SocNet, DMBIH, BigPMA, Revised Selected Papers. Peng, W-C., Wang, H., Zhou, Z-H., Ho, T. B., Tseng, V. S., Chen, A. L. P. & Bailey, J. (eds.). Springer Verlag, p. 639-651 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8643).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Genetic testing knowledge base (GTKB) towards individualized genetic test recommendation - An experimental study

    Zhu, Q., Liu, H., Chute, C. G. & Ferber, M., Dec 29 2014, Proceedings - 2014 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2014. Zheng, H., Hu, X. T., Berrar, D., Wang, Y., Dubitzky, W., Hao, J-K., Cho, K-H. & Gilbert, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 574-577 4 p. 6999223. (Proceedings - 2014 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2014).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • ICD-11 and SNOMED CT Common Ontology: Circulatory System

    Rodrigues, J. M., Schulz, S., Rector, A., Spackman, K., Millar, J., Campbell, J., Üstün, B., Chute, C. G., Solbrig, H., Mea, V. D. & Persson, K. B., 2014, e-Health - For Continuity of Care - Proceedings of MIE 2014. Pape-Haugaard, L., Seroussi Brigitte, B., Saka, O., Lovis, C., Hasman, A. & Andersen, S. K. (eds.). IOS Press, p. 1043-1047 5 p. (Studies in Health Technology and Informatics; vol. 205).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    9 Scopus citations

  • Mining severe drug-drug interaction adverse events using semantic web technologies: A case study

    Jiang, G., Liu, H., Solbrig, H. R. & Chute, C. G., 2014, Trends and Applications in Knowledge Discovery and Data Mining - PAKDD 2014 International Workshops: DANTH, BDM, MobiSocial, BigEC, CloudSD, MSMV-MBI, SDA, DMDA-Health, ALSIP, SocNet, DMBIH, BigPMA, Revised Selected Papers. Peng, W-C., Wang, H., Zhou, Z-H., Ho, T. B., Tseng, V. S., Chen, A. L. P. & Bailey, J. (eds.). Springer Verlag, p. 628-638 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8643).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Using semantic web technologies for quality measure phenotyping algorithm representation and automatic execution on EHR data

    Shen, F., Li, D., Liu, H., Lee, Y., Pathak, J., Chute, C. G. & Tao, C., 2014, 2014 IEEE-EMBS International Conference on Biomedical and Health Informatics, BHI 2014. IEEE Computer Society, p. 531-534 4 p. 6864419. (2014 IEEE-EMBS International Conference on Biomedical and Health Informatics, BHI 2014).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • What's in a Class? Lessons Learnt from the ICD-SNOMED CT Harmonisation

    Schulz, S., Rodrigues, J. M., Rector, A., Spackman, K., Campbell, J., Üstün, B., Chute, C. G., Solbrig, H., Della Mea, V., Millar, J. & Brand Persson, K., 2014, e-Health - For Continuity of Care - Proceedings of MIE 2014. Pape-Haugaard, L., Seroussi Brigitte, B., Saka, O., Lovis, C., Hasman, A. & Andersen, S. K. (eds.). IOS Press, p. 1038-1042 5 p. (Studies in Health Technology and Informatics; vol. 205).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    5 Scopus citations
  • 2013

    Building a knowledge base of severe adverse drug events based on AERS reporting data using semantic Web technologies

    Jiang, G., Wang, L., Liu, H., Solbrig, H. R. & Chute, C. G., 2013, MEDINFO 2013 - Proceedings of the 14th World Congress on Medical and Health Informatics. 1-2 ed. IOS Press, p. 496-500 5 p. (Studies in Health Technology and Informatics; vol. 192, no. 1-2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    10 Scopus citations

  • Isosemantic rendering of clinical information using formal ontologies and RDF

    Martínez-Costa, C., Bosca, D., Legaz-García, M. C., Tao, C., Fernández Breis, J. T., Schulz, S. & Chute, C. G., Jan 1 2013, MEDINFO 2013 - Proceedings of the 14th World Congress on Medical and Health Informatics. 1-2 ed. IOS Press, 1 p. (Studies in Health Technology and Informatics; vol. 192, no. 1-2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    4 Scopus citations

  • Mining anti-coagulant drug-drug interactions from electronic health records using linked data

    Pathak, J., Kiefer, R. C. & Chute, C. G., 2013, Data Integration in the Life Sciences - 9th International Conference, DILS 2013, Proceedings. p. 128-140 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7970 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Mining drug-drug interaction patterns from linked data: A case study for Warfarin, Clopidogrel, and Simvastatin

    Pathak, J., Kiefer, R. C. & Chute, C. G., 2013, Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. p. 23-30 8 p. 6732595. (Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    2 Scopus citations

  • Phenotyping on EHR data using OWL and semantic web technologies

    Tao, C., Li, D., Shen, F., Lian, Z., Pathak, J., Liu, H. & Chute, C. G., Aug 12 2013, Smart Health - International Conference, ICSH 2013, Proceedings. p. 31-32 2 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8040 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Prioritizing journals relevant to a topic for addressing clinicians' information needs

    Jonnalagadda, S. R., Moosavinasab, S., Li, D., Abel, M. D., Chute, C. G. & Liu, H., 2013, Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. p. 5-6 2 p. 6732590. (Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    2 Scopus citations

  • Sharing ontology between ICD 11 and SNOMED CT will enable seamless Re-use and semantic interoperability

    Rodrigues, J. M., Schulz, S., Rector, A., Spackman, K., Üstün, B., Chute, C. G., Della Mea, V., Millar, J. & Persson, K. B., 2013, MEDINFO 2013 - Proceedings of the 14th World Congress on Medical and Health Informatics. 1-2 ed. IOS Press, p. 343-346 4 p. (Studies in Health Technology and Informatics; vol. 192, no. 1-2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    18 Scopus citations

  • Standardized drug and pharmacological class network construction

    Zhu, Q., Jiang, G., Wang, L. & Chute, C. G., 2013, MEDINFO 2013 - Proceedings of the 14th World Congress on Medical and Health Informatics. 1-2 ed. IOS Press, p. 1125 1 p. (Studies in Health Technology and Informatics; vol. 192, no. 1-2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    3 Scopus citations

  • Towards assigning references using semantic, journal and citation relevance

    Li, D. C., Liu, H., Chute, C. G. & Jonnalagadda, S. R., 2013, Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. p. 499-503 5 p. 6732545. (Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Using linked data for mining drug-drug interactions in electronic health records

    Pathak, J., Kiefer, R. C. & Chute, C. G., 2013, MEDINFO 2013 - Proceedings of the 14th World Congress on Medical and Health Informatics. 1-2 ed. IOS Press, p. 682-686 5 p. (Studies in Health Technology and Informatics; vol. 192, no. 1-2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    21 Scopus citations
  • 2012

    Applying Linked Data principles to represent patient's electronic health records at Mayo Clinic: A case report

    Pathak, J., Kiefer, R. C. & Chute, C. G., 2012, IHI'12 - Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium. p. 455-464 10 p. (IHI'12 - Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    19 Scopus citations

  • A semantic-web oriented representation of clinical element model for secondary use of electronic healthcare data

    Tao, C., Jiang, G., Oniki, T. A., Freimuth, R. R., Pathak, J., Zhu, Q., Sharma, D., Huff, S. M. & Chute, C. G., 2012, Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012. p. 133 1 p. 6366225. (Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Harmonization of detailed clinical models with clinical study data standards

    Jiang, G., Evans, J., Oniki, T., Coyle, J., Bain, L., Huff, S., Kush, R. & Chute, C. G., 2012, MIX-HS'12 - Proceedings of the 2nd International Workshop on Managing Interoperability and Complexity in Health Systems, Co-located with CIKM 2012. p. 23-30 8 p. (International Conference on Information and Knowledge Management, Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Modeling UIMA type system using web ontology language - Towards interoperability among UIMA-based NLP tools

    Liu, H., Wu, S., Tao, C. & Chute, C., 2012, MIX-HS'12 - Proceedings of the 2nd International Workshop on Managing Interoperability and Complexity in Health Systems, Co-located with CIKM 2012. p. 31-36 6 p. (International Conference on Information and Knowledge Management, Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    3 Scopus citations

  • Ontology-based temporal relation modeling with map-reduce latent dirichlet allocations for big EHR data

    Li, D., Tao, C., Liu, H. & Chute, C., 2012, Proceedings - 2nd International Conference on Cloud and Green Computing and 2nd International Conference on Social Computing and Its Applications, CGC/SCA 2012. p. 708-715 8 p. 6382894. (Proceedings - 2nd International Conference on Cloud and Green Computing and 2nd International Conference on Social Computing and Its Applications, CGC/SCA 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Optimizing semantic MEDLINE for translational science studies using semantic web technologies

    Tao, C., Zhang, Y., Jiang, G., Bouamrane, M. M. & Chute, C. G., 2012, MIX-HS'12 - Proceedings of the 2nd International Workshop on Managing Interoperability and Complexity in Health Systems, Co-located with CIKM 2012. p. 53-57 5 p. (International Conference on Information and Knowledge Management, Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    11 Scopus citations

  • Proposed SKOS extensions for bioportal terminology services

    Tao, C., Noy, N. F., Solbrig, H. R., Shah, N. H., Musen, M. A. & Chute, C. G., 2012, The Semantic Web - Joint International Semantic Technology Conference, JIST 2011, Proceedings. p. 342-349 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7185 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Systematic analysis of cross-institutional medication description patterns in clinical notes

    Sohn, S., Murphy, S. P., Jonnalagadda, S. R., Wagholikar, K., Wu, S. T., Chute, C. G., Liu, H. & Halgrim, S., 2012, Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012. p. 118 1 p. 6366211. (Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • The Linked Clinical Data project: Applying Semantic Web technologies for clinical and translational research using electronic medical records

    Pathak, J., Kiefer, R. C. & Chute, C. G., 2012, 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, SWAT4LS 2011. p. 94-95 2 p. (ACM International Conference Proceeding Series).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Towards event sequence representation, reasoning and visualization for EHR data

    Tao, C., Wongsuphasawat, K., Clark, K., Plaisant, C., Shneiderman, B. & Chute, C. G., 2012, IHI'12 - Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium. p. 801-805 5 p. (IHI'12 - Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    12 Scopus citations

  • Using semantic web technology to support ICD-11 textual definitions authoring

    Jiang, G., Solbrig, H. R. & Chute, C. G., 2012, 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, SWAT4LS 2011. p. 38-44 7 p. (ACM International Conference Proceeding Series).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    3 Scopus citations

  • Validation and discovery of genotype-phenotype associations in chronic diseases using linked data

    Pathak, J., Kiefer, R., Freimuth, R. & Chute, C., Jan 1 2012, Quality of Life Through Quality of Information - Proceedings of MIE 2012. IOS Press, p. 549-553 5 p. (Studies in Health Technology and Informatics; vol. 180).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations
  • 2011

    Generality and reuse in a common type system for clinical natural language processing

    Wu, S. T., Kaggal, V. C., Savova, G. K., Liu, H., Dligach, D., Zheng, J., Chapman, W. W. & Chute, C. G., 2011, CIKM 2011 Glasgow: MIXHS'11 - Proceedings of the 1st International Workshop on Managing Interoperability and Complexity in Health Systems. p. 27-34 8 p. (International Conference on Information and Knowledge Management, Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    4 Scopus citations

  • Toward semantic web based knowledge representation and extraction from electronic health records

    Tao, C., Pathak, J., Welch, S. R., Bouamrane, M. M., Huff, S. M. & Chute, C. G., 2011, CIKM 2011 Glasgow: MIXHS'11 - Proceedings of the 1st International Workshop on Managing Interoperability and Complexity in Health Systems. p. 75-78 4 p. (International Conference on Information and Knowledge Management, Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    8 Scopus citations
  • 2010

    Time-oriented question answering from clinical narratives using semantic-web techniques

    Tao, C., Solbrig, H. R., Sharma, D. K., Wei, W. Q., Savova, G. K. & Chute, C. G., 2010, The Semantic Web, ISWC 2010 - 9th International Semantic Web Conference, ISWC 2010, Revised Selected Papers. PART 2 ed. Springer Verlag, p. 241-256 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6497 LNCS, no. PART 2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    25 Scopus citations
  • 2008

    Adopting graph traversal techniques for context-driven value sets extraction from biomedical knowledge sources

    Pathak, J., Jiang, G., Dwarkanath, S. O., Buntrock, J. D. & Chute, C. G., 2008, Proceedings - IEEE International Conference on Semantic Computing 2008, ICSC 2008. p. 460-467 8 p. 4597226. (Proceedings - IEEE International Conference on Semantic Computing 2008, ICSC 2008).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    2 Scopus citations

  • Constructing evaluation corpora for automated clinical named entity recognition

    Ogren, P. V., Savova, G. K. & Chute, C. G., 2008, Proceedings of the 6th International Conference on Language Resources and Evaluation, LREC 2008. European Language Resources Association (ELRA), p. 3143-3150 8 p. (Proceedings of the 6th International Conference on Language Resources and Evaluation, LREC 2008).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    34 Scopus citations

  • LexSearch: An approach for leveraging semantic annotations to searching ontologies

    Pathak, J., Buntrock, J. D. & Chute, C. G., 2008, Semantic Scientific Knowledge Integration - Papers from the AAAI Spring Symposium, Technical Report. p. 68-73 6 p. (AAAI Spring Symposium - Technical Report; vol. SS-08-05).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Modular ontology techniques and their applications in the biomedical domain

    Pathak, J., Johnson, T. M. & Chute, C. G., 2008, 2008 IEEE International Conference on Information Reuse and Integration, IEEE IRI-2008. p. 351-356 6 p. 4583056. (2008 IEEE International Conference on Information Reuse and Integration, IEEE IRI-2008).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    4 Scopus citations