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Dive into the research topics where Atul Deshpande is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
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BIWT: a bioinformatics walkthrough for embedding spatial multiomics in agent-based models for virtual cells
Bergman, D. R., Johnson, J. A. I., Naji, M., Booth, M., Lima da Rocha, H., Deshpande, A., Sidiropoulos, D. N., Lopez-Vidal, T., Heiland, R., Kagohara, L. T., Anders, R. A., Zheng, L., Jaffee, E. M., Stein-O’Brien, G., Macklin, P. & Fertig, E. J., Nov 1 2025, In: Bioinformatics. 41, 11, btaf571.Research output: Contribution to journal › Article › peer-review
Open Access -
CD137 agonism enhances anti-PD1 induced activation of expanded CD8+ T cell clones in a neoadjuvant pancreatic cancer clinical trial
Montagne, J. M., Mitchell, J. T., Tandurella, J. A., Christenson, E. S., Danilova, L. V., Deshpande, A., Loth, M., Sidiropoulos, D. N., Davis-Marcisak, E., Bergman, D. R., Zhu, Q., Wang, H., Kagohara, L. T., Engle, L. L., Green, B. F., Favorov, A. V., Ho, W. J., Lim, S. J., Zhang, R. & Li, P. & 14 others, , Jan 17 2025, In: iScience. 28, 1, 111569.Research output: Contribution to journal › Article › peer-review
Open Access -
Human interpretable grammar encodes multicellular systems biology models to democratize virtual cell laboratories
Johnson, J. A. I., Bergman, D. R., Rocha, H. L., Zhou, D. L., Cramer, E., Mclean, I. C., Dance, Y. W., Booth, M., Nicholas, Z., Lopez-Vidal, T., Deshpande, A., Heiland, R., Bucher, E., Shojaeian, F., Dunworth, M., Forjaz, A., Getz, M., Godet, I., Kurtoglu, F. & Lyman, M. & 27 others, , Aug 21 2025, In: Cell. 188, 17, p. 4711-4733.e37Research output: Contribution to journal › Article › peer-review
Open Access -
Neoadjuvant Immunotherapy Promotes the Formation of Mature Tertiary Lymphoid Structures in a Remodeled Pancreatic Tumor Microenvironment
Sidiropoulos, D. N., Shin, S. M., Wetzel, M., Girgis, A. A., Bergman, D., Danilova, L., Perikala, S., Shu, D., Montagne, J. M., Deshpande, A., Leatherman, J., Dequiedt, L., Jacobs, V., Ogurtsova, A., Mo, G., Yuan, X., Lvovs, D., Stein-O’Brien, G., Yarchoan, M. & Zhu, Q. & 9 others, , Nov 1 2025, In: Cancer Immunology Research. 13, 11, p. 1716-1731 16 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Spatial proteomics and transcriptomics reveal early immune cell organization in pancreatic intraepithelial neoplasia
Lyman, M. R., Mitchell, J. T., Raghavan, S., Kagohara, L. T., Huff, A. L., Haldar, S. D., Shin, S. M., Guinn, S., Barrett, B., Longway, G., Hernandez, A., Coyne, E. M., Yuan, X., Andaloori, L., Lai, J., Liu, Y. Z., Karchin, R., Gupta, A., Kiemen, A. L. & Forjaz, A. & 14 others, , Aug 8 2025, In: JCI Insight. 10, 15, e191595.Research output: Contribution to journal › Article › peer-review
Open Access