Research output per year
Research output per year
- 33 results
Search results
-
2024
B. subtilis MutS2 splits stalled ribosomes into subunits without mRNA cleavage
Park, E. N., Mackens-Kiani, T., Berhane, R., Esser, H., Erdenebat, C., Burroughs, A. M., Berninghausen, O., Aravind, L., Beckmann, R., Green, R. & Buskirk, A. R., Feb 15 2024, In: EMBO Journal. 43, 4, p. 484-506 23 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Riboformer: a deep learning framework for predicting context-dependent translation dynamics
Shao, B., Yan, J., Zhang, J., Liu, L., Chen, Y. & Buskirk, A. R., Dec 2024, In: Nature communications. 15, 1, 2011.Research output: Contribution to journal › Article › peer-review
Open Access -
2023
Elongation Factor P Is Important for Sporulation Initiation
Feaga, H. A., Hong, H. R., Prince, C. R., Rankin, A., Buskirk, A. R. & Dworkin, J., Feb 2023, In: Journal of bacteriology. 205, 2Research output: Contribution to journal › Article › peer-review
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RNF14-dependent atypical ubiquitylation promotes translation-coupled resolution of RNA-protein crosslinks
Zhao, S., Cordes, J., Caban, K. M., Götz, M. J., Mackens-Kiani, T., Veltri, A. J., Sinha, N. K., Weickert, P., Kaya, S., Hewitt, G., Nedialkova, D. D., Fröhlich, T., Beckmann, R., Buskirk, A. R., Green, R. & Stingele, J., Dec 7 2023, In: Molecular cell. 83, 23, p. 4290-4303.e9Research output: Contribution to journal › Article › peer-review
Open Access -
2022
Identifying Small Open Reading Frames in Prokaryotes with Ribosome Profiling
Vazquez-Laslop, N., Sharma, C. M., Mankin, A. & Buskirk, A. R., Jan 2022, In: Journal of bacteriology. 204, 1, e00294-21.Research output: Contribution to journal › Article › peer-review
Open Access -
Ribosome collisions induce mRNA cleavage and ribosome rescue in bacteria
Saito, K., Kratzat, H., Campbell, A., Buschauer, R., Burroughs, A. M., Berninghausen, O., Aravind, L., Green, R., Beckmann, R. & Buskirk, A. R., Mar 17 2022, In: Nature. 603, 7901, p. 503-508 6 p.Research output: Contribution to journal › Article › peer-review
Open Access -
2021
Loss of n1-methylation of g37 in trna induces ribosome stalling and reprograms gene expression
Masuda, I., Hwang, J. Y., Christian, T., Maharjan, S., Mohammad, F., Gamper, H., Buskirk, A. R. & Hou, Y. M., Aug 2021, In: eLife. 10, e70619.Research output: Contribution to journal › Article › peer-review
Open Access -
Ribosome profiling in archaea reveals leaderless translation, novel translational initiation sites, and ribosome pausing at single codon resolution
Gelsinger, D. R., Dallon, E., Reddy, R., Mohammad, F., Buskirk, A. R. & DiRuggiero, J., 2021, In: Nucleic acids research. 48, 10, p. 5201-5216 16 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
2020
Molecular mechanism of translational stalling by inhibitory codon combinations and poly(A) tracts
Tesina, P., Lessen, L. N., Buschauer, R., Cheng, J., Wu, C. C. C., Berninghausen, O., Buskirk, A. R., Becker, T., Beckmann, R. & Green, R., Feb 3 2020, In: EMBO Journal. 39, 3, e103365.Research output: Contribution to journal › Article › peer-review
Open Access29 Scopus citations -
Ribosome recycling is not critical for translational coupling in E. Coli
Saito, K., Green, R. & Buskirk, A. R., Sep 2020, In: eLife. 9, p. 1-37 37 p., e59974.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
Translational initiation in E. Coli occurs at the correct sites genome-wide in the absence of mrna-rrna base-pairing
Saito, K., Green, R. & Buskirk, A. R., Feb 2020, In: eLife. 9, e55002.Research output: Contribution to journal › Article › peer-review
Open Access12 Scopus citations -
2019
A systematically-revised ribosome profiling method for bacteria reveals pauses at single-codon resolution
Mohammad, F., Green, R. & Buskirk, A. R., Feb 2019, In: eLife. 8, e42591.Research output: Contribution to journal › Article › peer-review
Open Access35 Scopus citations -
Identifying small proteins by ribosome profiling with stalled initiation complexes
Weaver, J., Mohammad, F., Buskirk, A. R. & Storz, G., Mar 1 2019, In: mBio. 10, 2, e02819-18.Research output: Contribution to journal › Article › peer-review
Open Access41 Scopus citations -
Protocol for Ribosome Profiling in Bacteria
Mohammad, F. & Buskirk, A. R., Dec 20 2019, In: Bio-protocol. 9, 24, e3468.Research output: Contribution to journal › Article › peer-review
Open Access -
2017
A ribosome profiling study of mRNA cleavage by the endonuclease RelE
Hwang, J. Y. & Buskirk, A. R., Jan 9 2017, In: Nucleic acids research. 45, 1, p. D327-D336Research output: Contribution to journal › Article › peer-review
Open Access22 Scopus citations -
eIF5A Functions Globally in Translation Elongation and Termination
Schuller, A. P., Wu, C. C. C., Dever, T. E., Buskirk, A. R. & Green, R., Apr 20 2017, In: Molecular cell. 66, 2, p. 194-205.e5Research output: Contribution to journal › Article › peer-review
Open Access142 Scopus citations -
2016
Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling
Mohammad, F., Woolstenhulme, C. J., Green, R. & Buskirk, A. R., Feb 2 2016, In: Cell Reports. 14, 4, p. 686-694 9 p.Research output: Contribution to journal › Article › peer-review
Open Access99 Scopus citations -
2015
High-Precision analysis of translational pausing by ribosome profiling in bacteria lacking EFP
Woolstenhulme, C. J., Guydosh, N. R., Green, R. & Buskirk, A. R., Apr 7 2015, In: Cell Reports. 11, 1, p. 13-21 9 p.Research output: Contribution to journal › Article › peer-review
Open Access128 Scopus citations -
2014
A conserved proline triplet in Val-tRNA synthetase and the origin of elongation factor P
Starosta, A. L., Lassak, J., Peil, L., Atkinson, G. C., Woolstenhulme, C. J., Virumäe, K., Buskirk, A., Tenson, T., Remme, J., Jung, K. & Wilson, D. N., 2014, In: Cell Reports. 9, 2, p. 476-483 8 p.Research output: Contribution to journal › Article › peer-review
Open Access20 Scopus citations -
An unusual mechanism for EF-Tu activation during tmRNA-mediated ribosome rescue
Miller, M. R. & Buskirk, A. R., Feb 2014, In: RNA. 20, 2, p. 228-235 8 p.Research output: Contribution to journal › Article › peer-review
Open Access14 Scopus citations -
Rejection of tmRNA SmpB after GTP hydrolysis by EF-Tu on ribosomes stalled on intact mRNA
Kurita, D., Miller, M. R., Muto, A., Buskirk, A. R. & Himeno, H., Nov 1 2014, In: RNA. 20, 11, p. 1706-1714 9 p.Research output: Contribution to journal › Article › peer-review
Open Access8 Scopus citations -
2013
eif5A promotes translation of polyproline motifs
Gutierrez, E., Shin, B. S., Woolstenhulme, C. J., Kim, J. R., Saini, P., Buskirk, A. R. & Dever, T. E., Jul 11 2013, In: Molecular cell. 51, 1, p. 35-45 11 p.Research output: Contribution to journal › Article › peer-review
Open Access244 Scopus citations -
Nascent peptides that block protein synthesis in bacteria
Woolstenhulme, C. J., Parajuli, S., Healey, D. W., Valverde, D. P., Petersen, E. N., Starosta, A. L., Guydosh, N. R., Johnson, W. E., Wilson, D. N. & Buskirk, A. R., Mar 5 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 10, p. E878-E887Research output: Contribution to journal › Article › peer-review
Open Access99 Scopus citations -
2011
The role of SmpB and the ribosomal decoding center in licensing tmRNA entry into stalled ribosomes
Miller, M. R., Liu, Z., Cazier, D. J., Gebhard, G. M., Herron, S. R., Zaher, H. S., Green, R. & Buskirk, A. R., Sep 2011, In: RNA. 17, 9, p. 1727-1736 10 p.Research output: Contribution to journal › Article › peer-review
Open Access21 Scopus citations -
2010
rRNA mutations that inhibit transfer-messenger RNA activity on stalled ribosomes
Crandall, J., Rodriguez-Lopez, M., Pfeiffer, M., Mortensen, B. & Buskirk, A., Jan 2010, In: Journal of bacteriology. 192, 2, p. 553-559 7 p.Research output: Contribution to journal › Article › peer-review
6 Scopus citations -
2009
Can reaction mechanisms be proven?
Buskirk, A. & Baradaran, H., May 2009, In: Journal of Chemical Education. 86, 5, p. 551-559 9 p.Research output: Contribution to journal › Article › peer-review
Open Access12 Scopus citations -
Genetic identification of nascent peptides that induce ribosome stalling
Tanner, D. R., Cariello, D. A., Woolstenhulme, C. J., Broadbent, M. A. & Buskirk, A. R., Dec 11 2009, In: Journal of Biological Chemistry. 284, 50, p. 34809-34818 10 p.Research output: Contribution to journal › Article › peer-review
Open Access74 Scopus citations -
SmpB Contributes to Reading Frame Selection in the Translation of Transfer-Messenger RNA
Watts, T., Cazier, D. A., Healey, D. & Buskirk, A., Aug 14 2009, In: Journal of molecular biology. 391, 2, p. 275-281 7 p.Research output: Contribution to journal › Article › peer-review
23 Scopus citations -
2008
The role of upstream sequences in selecting the reading frame on tmRNA
Miller, M. R., Healey, D. W., Robison, S. G., Dewey, J. D. & Buskirk, A. R., Jun 30 2008, In: BMC Biology. 6, 29.Research output: Contribution to journal › Article › peer-review
Open Access23 Scopus citations -
2006
Genetic analysis of the structure and function of transfer messenger RNA pseudoknot 1
Tanner, D. R., Dewey, J. D., Miller, M. R. & Buskirk, A. R., Apr 14 2006, In: Journal of Biological Chemistry. 281, 15, p. 10561-10566 6 p.Research output: Contribution to journal › Article › peer-review
Open Access22 Scopus citations -
2004
Directed evolution of ligand dependence: Small-molecule-activated protein splicing
Buskirk, A. R., Ong, Y. C., Gartner, Z. J. & Liu, D. R., Jul 20 2004, In: Proceedings of the National Academy of Sciences of the United States of America. 101, 29, p. 10505-10510 6 p.Research output: Contribution to journal › Article › peer-review
121 Scopus citations -
Engineering a ligand-dependent RNA transcriptional activator
Buskirk, A. R., Landrigan, A. & Liu, D. R., Aug 2004, In: Chemistry and Biology. 11, 8, p. 1157-1163 7 p.Research output: Contribution to journal › Article › peer-review
Open Access80 Scopus citations -
2003
In vivo evolution of an RNA-based transcriptional activator
Buskirk, A. R., Kehayova, P. D., Landrigan, A. & Liu, D. R., Jun 1 2003, In: Chemistry and Biology. 10, 6, p. 533-540 8 p.Research output: Contribution to journal › Article › peer-review
Open Access59 Scopus citations