Alex Kolodkin

Research output

Research output per year 1983 1998 1999 2000 2003 2004 2005 2006 2007 2011 2012 2013 2014 2015 2017 2020 2022 2023 2024

• 86 Article
• 18 Review article
• 5 Chapter
• 5 Comment/debate
• 8 More
  • 4 Short survey
  • 2 Editorial
  • 1 Book
  • 1 Letter

Research output per year

Research output per year

Search results

• 2024

  Microtubule-binding protein MAP1B regulates interstitial axon branching of cortical neurons via the tubulin tyrosination cycle

  Ziak, J., Dorskind, J. M., Trigg, B., Sudarsanam, S., Jin, X. O., Hand, R. & Kolodkin, A. L., 2024, (Accepted/In press) In: EMBO Journal.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • microtubule-associated protein 1B 100%
  • Microtubule Proteins 88%
  • Tubulin 68%
  • Interstitial 66%
  • Axons 55%
• 2023

  Drebrin Regulates Collateral Axon Branching in Cortical Layer II/III Somatosensory Neurons

  Dorskind, J. M., Sudarsanam, S., Hand, R. A., Ziak, J., Amoah-Dankwah, M., Guzman-Clavel, L., Soto-Vargas, J. L. & Kolodkin, A. L., Nov 15 2023, In: Journal of Neuroscience. 43, 46, p. 7745-7765 21 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • drebrins 100%
  • Axons 51%
  • Neurons 36%
  • Pyramidal Cells 13%
  • Cytoskeletal Proteins 7%

• Palmitoylation regulates neuropilin-2 localization and function in cortical neurons and conveys specificity to semaphorin signaling via palmitoyl acyltransferases

  Koropouli, E., Wang, Q., Mejias-Estevez, R. M., Hand, R., Wang, T., Ginty, D. D. & Kolodkin, A. L., Apr 2023, In: eLife. 12, e83217.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Neuropilin-2 100%
  • Palmitoylation 96%
  • Semaphorins 85%
  • Acyltransferases 84%
  • Lipoylation 84%

• The Retinal Ganglion Cell Repopulation, Stem Cell Transplantation, and Optic Nerve Regeneration Consortium

  Johnson, T. V., Baranov, P., Di Polo, A., Fortune, B., Gokoffski, K. K., Goldberg, J. L., Guido, W., Kolodkin, A. L., Mason, C. A., Ou, Y., Reh, T. A., Ross, A. G., Samuels, B. C. & Zack, D. J., Dec 2023, In: Ophthalmology Science. 3, 4, 100390.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Nerve Regeneration 100%
  • Retinal Ganglion Cells 95%
  • Stem Cell Transplantation 87%
  • Optic Nerve 85%
  • Optic Nerve Diseases 51%
• 2022

  Characterization of non-alpha retinal ganglion cell injury responses reveals a possible block to restoring ipRGC function

  Hunyara, J. L., Foshe, S., Varadarajan, S. G., Gribble, K. D., Huberman, A. D. & Kolodkin, A. L., Nov 2022, In: Experimental Neurology. 357, 114176.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Retinal Ganglion Cells 100%
  • Axons 76%
  • Wounds and Injuries 42%
  • Direction compound 42%
  • Nerve Crush 20%

• Molecular neuroscience community shares perspectives

  Gura, T., Acker-Palmer, A., Kolodkin, A., Meijers, R., Mizuno, N., Seiradake, E. & Tessier-Lavigne, M., Nov 16 2022, In: Neuron. 110, 22, p. 3656-3660 5 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Greece 100%
  • Neurobiology 98%
  • Neurosciences 90%
  • Cues 73%
  • Nervous System 68%

• Sleep need-dependent changes in functional connectivity facilitate transmission of homeostatic sleep drive

  Ho, M. C. W., Tabuchi, M., Xie, X., Brown, M. P., Luu, S., Wang, S., Kolodkin, A. L., Liu, S. & Wu, M. N., Nov 21 2022, In: Current Biology. 32, 22, p. 4957-4966.e5

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Cholinergic 100%
  • sleep 86%
  • Drive 80%
  • neurons 65%
  • Sleep 61%

• The transcription factor Tbx5 regulates direction-selective retinal ganglion cell development and image stabilization

  Al-Khindi, T., Sherman, M. B., Kodama, T., Gopal, P., Pan, Z., Kiraly, J. K., Zhang, H., Goff, L. A., du Lac, S. & Kolodkin, A. L., Oct 10 2022, In: Current Biology. 32, 19, p. 4286-4298.e5

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Retinal 100%
  • Retinal Ganglion Cells 99%
  • transcription factors 67%
  • Transcription Factors 65%
  • Direction compound 63%
• 2021

  Development of the vertebrate retinal direction-selective circuit

  Hamilton, N. R., Scasny, A. J. & Kolodkin, A. L., Sep 2021, In: Developmental biology. 477, p. 273-283 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Vertebrates 100%
  • Direction compound 80%
  • Retina 36%
  • Chronology 19%
  • Retinal Ganglion Cells 15%
• 2020

  Binary Fate Choice between Closely Related Interneuronal Types Is Determined by a Fezf1-Dependent Postmitotic Transcriptional Switch

  Peng, Y. R., James, R. E., Yan, W., Kay, J. N., Kolodkin, A. L. & Sanes, J. R., Feb 5 2020, In: Neuron. 105, 3, p. 464-474.e6

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Lighting 100%
  • Genes 36%
  11 Scopus citations

• Framework for advancing rigorous research

  Koroshetz, W. J., Behrman, S., Brame, C. J., Branchaw, J. L., Brown, E. N., Clark, E. A., Dockterman, D., Elm, J. J., Gay, P. L., Green, K. M., Hsi, S., Kaplitt, M. G., Kolber, B. J., Kolodkin, A. L., Lipscombe, D., Macleod, M. R., McKinney, C. C., Munafò, M. R., Oakley, B., Olimpo, J. T., & 7 othersDu Sert, N. P., Raman, I. M., Riley, C., Shelton, A. L., Uzzo, S. M., Crawford, D. C. & Silberberg, S. D., Mar 2020, In: eLife. 9, e55915.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Biological Science Disciplines 100%
  • Research Personnel 55%
  3 Scopus citations

• MICAL1 constrains cardiac stress responses and protects against disease by oxidizing CaMKII

  Konstantinidis, K., Bezzerides, V. J., Lai, L., Isbell, H. M., Wei, A. C., Wu, Y., Viswanathan, M. C., Blum, I. D., Granger, J. M., Heims-Waldron, D., Zhang, D., Luczak, E. D., Murphy, K. R., Lu, F., Gratz, D. H., Manta, B., Wang, Q., Wang, Q., Kolodkin, A. L., Gladyshev, V. N., & 8 othersHund, T. J., Pu, W. T., Wu, M. N., Cammarato, A., Bianchet, M. A., Shea, M. A., Levine, R. L. & Anderson, M. E., Sep 1 2020, In: Journal of Clinical Investigation. 130, 9, p. 4663-4678 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Calcium-Calmodulin-Dependent Protein Kinase Type 2 100%
  • Oxidation-Reduction 45%
  • Methionine 32%
  • Cardiac Arrhythmias 26%
  • Polymorphic catecholergic ventricular tachycardia 24%
  3 Scopus citations
• 2019

  Genetic access to neurons in the accessory optic system reveals a role for Sema6A in midbrain circuitry mediating motion perception

  Lilley, B. N., Sabbah, S., Hunyara, J. L., Gribble, K. D., Al-Khindi, T., Xiong, J., Wu, Z., Berson, D. M. & Kolodkin, A. L., Jan 1 2019, In: Journal of Comparative Neurology. 527, 1, p. 282-296 15 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Pretectal Region 100%
  • Semaphorins 96%
  • Motion Perception 93%
  • Cervical Cord 78%
  • Mesencephalon 69%
  6 Scopus citations

• Semaphorin 2b Regulates Sleep-Circuit Formation in the Drosophila Central Brain

  Xie, X., Tabuchi, M., Corver, A., Duan, G., Wu, M. N. & Kolodkin, A. L., Oct 23 2019, In: Neuron. 104, 2, p. 322-337.e14

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Semaphorins 100%
  • plexin 72%
  • Drosophila 64%
  • Sleep 54%
  • Brain 34%
  3 Scopus citations
• 2017

  Establishing Wiring Specificity in Visual System Circuits: From the Retina to the Brain

  Zhang, C., Kolodkin, A. L., Wong, R. O. & James, R. E., Jul 25 2017, In: Annual review of neuroscience. 40, p. 395-424 30 p.

  Research output: Contribution to journal › Article › peer-review

  • Retina 100%
  • Visual Pathways 72%
  • Brain 56%
  • Nervous System 46%
  17 Scopus citations

• Neuropilin-2/PlexinA3 Receptors Associate with GluA1 and Mediate Sema3F-Dependent Homeostatic Scaling in Cortical Neurons

  Wang, Q., Chiu, S. L., Koropouli, E., Hong, I., Mitchell, S., Easwaran, T. P., Hamilton, N. R., Gustina, A. S., Zhu, Q., Ginty, D. D., Huganir, R. L. & Kolodkin, A. L., Dec 6 2017, In: Neuron. 96, 5, p. 1084-1098.e7

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Neuropilin-2 100%
  • Semaphorins 85%
  • AMPA Receptors 42%
  • Glutamate Receptors 39%
  • Neurons 36%
  30 Scopus citations

• The laminar organization of the drosophila ellipsoid body is semaphorin-dependent and prevents the formation of ectopic synaptic connections

  Xie, X., Tabuchi, M., Brown, M. P., Mitchell, S. P., Wu, M. N. & Kolodkin, A. L., Jun 20 2017, In: eLife. 6, e25328.

  Research output: Contribution to journal › Article › peer-review

  • Semaphorins 100%
  • Lamination 93%
  • Drosophila 64%
  • Axons 48%
  • Neurons 42%
  20 Scopus citations

• Varicose and cheerio collaborate with pebble to mediate semaphorin-1a reverse signaling in Drosophila

  Jeong, S., Yang, D. S., Hong, Y. G., Mitchell, S. P., Brown, M. P. & Kolodkin, A. L., Sep 26 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 39, p. E8254-E8263

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Semaphorins 100%
  • Drosophila 64%
  • Actin Cytoskeleton 46%
  • Rho Guanine Nucleotide Exchange Factors 35%
  • Guanylate Kinases 35%
  4 Scopus citations
• 2016

  Ryk controls remapping of motor cortex during functional recovery after spinal cord injury

  Hollis, E. R., Ishiko, N., Yu, T., Lu, C. C., Haimovich, A., Tolentino, K., Richman, A., Tury, A., Wang, S. H., Pessian, M., Jo, E., Kolodkin, A. & Zou, Y., May 1 2016, In: Nature neuroscience. 19, 5, p. 697-705 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Forelimb 100%
  • Motor Cortex 84%
  • Spinal Cord Injuries 80%
  • Knockout Mice 51%
  • Wnt Receptors 42%
  46 Scopus citations
• 2015

  Axon Dynamics during Neocortical Laminar Innervation

  Hand, R., Khalid, S., Tam, E. & Kolodkin, A. L., Jul 14 2015, In: Cell Reports. 12, 2, p. 172-182 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Developmental 100%
  • Pyramidal Cells 86%
  • Cerebral Cortex 76%
  • Axons 72%
  • Environment 46%
  11 Scopus citations

• Functional Assembly of Accessory Optic System Circuitry Critical for Compensatory Eye Movements

  Sun, L. O., Brady, C. M., Cahill, H., Al-Khindi, T., Sakuta, H., Dhande, O. S., Noda, M., Huberman, A. D., Nathans, J. & Kolodkin, A. L., May 20 2015, In: Neuron. 86, 4, p. 971-984 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Semaphorins 100%
  • Eye Movements 72%
  • plexin 54%
  • varespladib methyl 36%
  • Visual Fields 35%
  46 Scopus citations

• Sculpting Neural Circuits by Axon and Dendrite Pruning

  Riccomagno, M. M. & Kolodkin, A. L., Nov 13 2015, In: Annual Review of Cell and Developmental Biology. 31, p. 779-805 27 p.

  Research output: Contribution to journal › Article › peer-review

  • Neuronal Plasticity 100%
  • Synapses 10%
  • Neuroglia 10%
  • Axons 10%
  • Mental Disorders 9%
  125 Scopus citations
• 2014

  Cas adaptor proteins organize the retinal ganglion cell layer downstream of integrin signaling

  Riccomagno, M. M., Sun, L. O., Brady, C. M., Alexandropoulos, K., Seo, S., Kurokawa, M. & Kolodkin, A. L., Feb 19 2014, In: Neuron. 81, 4, p. 779-786 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Retinal Ganglion Cells 100%
  • Integrins 82%
  • Proteins 32%
  • Laminin 31%
  • Laminin Receptors 21%
  17 Scopus citations

• Dlg5 regulates dendritic spine formation and synaptogenesis by controlling subcellular N-cadherin localization

  Wang, S. H. J., Celic, I., Choi, S. Y., Riccomagno, M., Wang, Q., Sun, L. O., Mitchell, S. P., Vasioukhin, V., Huganir, R. L. & Kolodkin, A. L., Sep 17 2014, In: Journal of Neuroscience. 34, 38, p. 12745-12761 17 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Dendritic Spines 100%
  • Guanylate Kinases 93%
  • Cadherins 83%
  • Synaptic Transmission 38%
  • Synapses 37%
  16 Scopus citations

• Function of the Drosophila receptor guanylyl cyclase Gyc76C in PlexA-mediated motor axon guidance

  Chak, K. & Kolodkin, A. L., Jan 1 2014, In: Development (Cambridge). 141, 1, p. 136-147 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Guanylate Cyclase-Coupled Receptors 100%
  • plexin 91%
  • Semaphorins 83%
  • Axon Guidance 74%
  • Drosophila 54%
  11 Scopus citations

• Semaphorin 5A inhibits synaptogenesis in early postnatal- and adult-born hippocampal dentate granule cells

  Duan, Y., Wang, S. H., Song, J., Mironova, Y., Ming, G. L., Kolodkin, A. L. & Giger, R. J., 2014, In: eLife. 3, e04390.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Semaphorins 100%
  • Dendritic Spines 21%
  • Autism Spectrum Disorder 18%
  • Synapses 15%
  • alpha-Amino-3-hydroxy-5-methyl-4-isoxazolepropionic Acid 10%
  53 Scopus citations
• 2013

  Cbl-associated protein regulates assembly and function of two tension-sensing structures in Drosophila

  Bharadwaj, R., Roy, M., Ohyama, T., Sivan-Loukianova, E., Delannoy, M., Lloyd, T. E., Zlatic, M., Eberl, D. F. & Kolodkin, A. L., Feb 1 2013, In: Development (Cambridge). 140, 3, p. 627-638 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Drosophila 100%
  • Drosophila Cbl protein 87%
  • Vinculin 48%
  • Proteins 39%
  • Muscles 35%
  20 Scopus citations

• MEGF8 is a modifier of BMP signaling in trigeminal sensory neurons

  Engelhard, C., Sarsfield, S., Merte, J., Wang, Q., Li, P., Beppu, H., Kolodkin, A. L., Sucov, H. M. & Ginty, D. D., Sep 17 2013, In: eLife. 2013, 2, e01160.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Bone Morphogenetic Proteins 94%
  • Sensory Receptor Cells 83%
  • Axons 54%
  • Axon Guidance 19%
  • Peripheral Nervous System 16%
  13 Scopus citations

• On and off retinal circuit assembly by divergent molecular mechanisms

  Sun, L. O., Jiang, Z., Rivlin-Etzion, M., Hand, R., Brady, C. M., Matsuoka, R. L., Yau, K. W., Feller, M. B. & Kolodkin, A. L., 2013, In: Science. 342, 6158, 1241974.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Semaphorins 100%
  • Amacrine Cells 93%
  • plexin 72%
  • varespladib methyl 48%
  • Direction compound 33%
  89 Scopus citations

• Sema6B, Sema6C, and Sema6D Expression and Function during Mammalian Retinal Development

  Matsuoka, R. L., Sun, L. O., Katayama, K. I., Yoshida, Y. & Kolodkin, A. L., Apr 30 2013, In: PloS one. 8, 4, e63207.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Semaphorins 100%
  • plexin 65%
  • Retina 36%
  • Ligands 19%
  • Retinal Neurons 18%
  11 Scopus citations
• 2012

  Autism spectrum disorder susceptibility gene TAOK2 affects basal dendrite formation in the neocortex

  De Anda, F. C., Rosario, A. L., Durak, O., Tran, T., Gräff, J., Meletis, K., Rei, D., Soda, T., Madabhushi, R., Ginty, D. D., Kolodkin, A. L. & Tsai, L. H., Jul 2012, In: Nature neuroscience. 15, 7, p. 1022-1031 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Neocortex 100%
  • Autism Spectrum Disorder 92%
  • Dendrites 92%
  • Semaphorin-3A 68%
  • Neuropilin-1 66%
  100 Scopus citations

• Guidance-cue control of horizontal cell morphology, lamination, and synapse formation in the mammalian outer retina

  Matsuoka, R. L., Jiang, Z., Samuels, I. S., Nguyen-Ba-Charvet, K. T., Sun, L. O., Peachey, N. S., Chédotal, A., Yau, K. W. & Kolodkin, A. L., May 16 2012, In: Journal of Neuroscience. 32, 20, p. 6859-6868 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Synapses 100%
  • Cues 94%
  • Retina 94%
  • Axons 38%
  • Visual Perception 26%
  53 Scopus citations

• The Control of Semaphorin-1a-Mediated Reverse Signaling by Opposing Pebble and RhoGAPp190 Functions in Drosophila

  Jeong, S., Juhaszova, K. & Kolodkin, A. L., Nov 21 2012, In: Neuron. 76, 4, p. 721-734 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Semaphorins 100%
  • Drosophila 64%
  • Axons 40%
  • Rho Guanine Nucleotide Exchange Factors 35%
  • GTPase-Activating Proteins 31%
  37 Scopus citations

• The extracellular matrix proteoglycan perlecan facilitates transmembrane semaphorin-mediated repulsive guidance

  Cho, J. Y., Chak, K., Andreone, B. J., Wooley, J. R. & Kolodkin, A. L., Oct 1 2012, In: Genes and Development. 26, 19, p. 2222-2235 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • perlecan 100%
  • Semaphorins 94%
  • Proteoglycans 72%
  • Extracellular Matrix 55%
  • plexin 51%
  34 Scopus citations

• The p150 ^Glued CAP-Gly Domain Regulates Initiation of Retrograde Transport at Synaptic Termini

  Lloyd, T. E., Machamer, J., O'Hara, K., Kim, J. H., Collins, S. E., Wong, M. Y., Sahin, B., Imlach, W., Yang, Y., Levitan, E. S., McCabe, B. D. & Kolodkin, A. L., Apr 26 2012, In: Neuron. 74, 2, p. 344-360 17 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Dynactin Complex 100%
  • Dyneins 33%
  • Kinesin 24%
  • Microtubules 18%
  • Motor Neuron Disease 16%
  98 Scopus citations

• The RacGAP β2-chimaerin selectively mediates axonal pruning in the hippocampus

  Riccomagno, M. M., Hurtado, A., Wang, H., MacOpson, J. G. J., Griner, E. M., Betz, A., Brose, N., Kazanietz, M. G. & Kolodkin, A. L., Jun 22 2012, In: Cell. 149, 7, p. 1594-1606 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Neuronal Plasticity 100%
  • Hippocampus 83%
  • Chemorepellent 69%
  • Protein 43%
  • Plastic Property 40%
  48 Scopus citations
• 2011

  A Combinatorial Semaphorin Code Instructs the Initial Steps of Sensory Circuit Assembly in the Drosophila CNS

  Wu, Z., Sweeney, L. B., Ayoob, J. C., Chak, K., Andreone, B. J., Ohyama, T., Kerr, R., Luo, L., Zlatic, M. & Kolodkin, A. L., Apr 28 2011, In: Neuron. 70, 2, p. 281-298 18 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • plexin 100%
  • Semaphorins 91%
  • Drosophila 59%
  • Axons 37%
  65 Scopus citations

• Class 5 transmembrane semaphorins control selective mammalian retinal lamination and function

  Matsuoka, R. L., Chivatakarn, O., Badea, T. C., Samuels, I. S., Cahill, H., Katayama, K. I., Kumar, S. R., Suto, F., Chédotal, A., Peachey, N. S., Nathans, J., Yoshida, Y., Giger, R. J. & Kolodkin, A. L., Aug 11 2011, In: Neuron. 71, 3, p. 460-473 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Semaphorins 100%
  • Neurites 77%
  • Retinal Ganglion Cells 39%
  • Retina 30%
  • Retinal Neurons 23%
  104 Scopus citations

• Mechanisms and molecules of neuronal wiring: a primer.

  Kolodkin, A. L. & Tessier-Lavigne, M., Jun 2011, In: Cold Spring Harbor perspectives in biology. 3, 6

  Research output: Contribution to journal › Article › peer-review

  • Axon Guidance 100%
  • Growth Cones 99%
  • Cues 68%
  • Nervous System 31%
  • Molecule 27%

• Secreted semaphorins from degenerating larval ORN axons direct adult projection neuron dendrite targeting

  Sweeney, L. B., Chou, Y. H., Wu, Z., Joo, W., Komiyama, T., Potter, C. J., Kolodkin, A. L., Garcia, K. C. & Luo, L., Dec 8 2011, In: Neuron. 72, 5, p. 734-747 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Semaphorins 100%
  • Dendrites 72%
  • Axons 61%
  • Neurons 42%
  • Drosophila 12%
  48 Scopus citations

• Transmembrane semaphorin signalling controls laminar stratification in the mammalian retina

  Matsuoka, R. L., Nguyen-Ba-Charvet, K. T., Parray, A., Badea, T. C., Chédotal, A. & Kolodkin, A. L., Feb 10 2011, In: Nature. 470, 7333, p. 259-264 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Semaphorins 100%
  • Amacrine Cells 70%
  • Retina 60%
  • Retinal Ganglion Cells 39%
  • Neurites 38%
  149 Scopus citations
• 2010

  A forward genetic screen in mice identifies Sema3A^K108N, which binds to Neuropilin-1 but cannot signal

  Merte, J., Wang, Q., Vander Kooi, C. W., Sarsfield, S., Leahy, D. J., Kolodkin, A. L. & Ginty, D. D., Apr 21 2010, In: Journal of Neuroscience. 30, 16, p. 5767-5775 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Semaphorin-3A 100%
  • Neuropilin-1 97%
  • Semaphorins 47%
  • Alleles 16%
  • Growth Cones 13%
  31 Scopus citations
• 2009

  A genetic pathway composed of Sox14 and Mical governs severing of dendrites during pruning

  Kirilly, D., Gu, Y., Huang, Y., Wu, Z., Bashirullah, A., Low, B. C., Kolodkin, A. L., Wang, H. & Yu, F., Dec 2009, In: Nature neuroscience. 12, 12, p. 1497-1505 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Dendrites 100%
  • Neuronal Plasticity 92%
  • Ecdysone 49%
  • Drosophila 30%
  • Transcription Factors 24%
  85 Scopus citations

• Secreted semaphorins control spine distribution and morphogenesis in the postnatal CNS

  Tran, T. S., Rubio, M. E., Clem, R. L., Johnson, D., Case, L., Tessier-Lavigne, M., Huganir, R. L., Ginty, D. D. & Kolodkin, A. L., Dec 24 2009, In: Nature. 462, 7276, p. 1065-1069 5 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Semaphorins 100%
  • Morphogenesis 70%
  • Spine 53%
  • Central Nervous System 51%
  • Synapses 23%
  161 Scopus citations

• Semaphorin 3F is a bifunctional guidance cue for dopaminergic axons and controls their fasciculation, channeling, rostral growth, and intracortical targeting

  Kolk, S. M., Gunput, R. A. F., Tran, T. S., Van Den Heuvel, D. M. A., Prasad, A. A., Hellemons, A. J. C. G. M., Adolfs, Y., Ginty, D. D., Kolodkin, A. L., Burbach, J. P. H., Smidt, M. P. & Pasterkamp, R. J., Oct 7 2009, In: Journal of Neuroscience. 29, 40, p. 12542-12557 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Semaphorins 100%
  • Fasciculation 99%
  • Neuropilin-2 93%
  • Axons 61%
  • Cues 60%
  75 Scopus citations
• 2007

  Crk-associated substrate (Cas) signaling protein functions with integrins to specify axon guidance during development

  Huang, Z., Yazdani, U., Thompson-Peer, K. L., Kolodkin, A. L. & Terman, J. R., Jun 2007, In: Development. 134, 12, p. 2337-2347 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Crk-Associated Substrate Protein 100%
  • Axon Guidance 75%
  • Integrins 55%
  • Drosophila 18%
  • Axon Fasciculation 16%
  23 Scopus citations

• Expression patterns of semaphorin7A and plexinC1 during rat neural development suggest roles in axon guidance and neuronal migration

  Pasterkamp, R. J., Kolk, S. M., Hellemons, A. J. C. G. M. & Kolodkin, A. L., 2007, In: BMC Developmental Biology. 7, 98.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Axon Guidance 100%
  • plexin 61%
  • Semaphorins 56%
  • Axons 51%
  • Growth 39%
  60 Scopus citations

• Semaphorin 7A initiates T-cell-mediated inflammatory responses through α1β1 integrin

  Suzuki, K., Okuno, T., Yamamoto, M., Pasterkamp, R. J., Takegahara, N., Takamatsu, H., Kitao, T., Takagi, J., Rennert, P. D., Kolodkin, A. L., Kumanogoh, A. & Kikutani, H., Apr 5 2007, In: Nature. 446, 7136, p. 680-684 5 p.

  Research output: Contribution to journal › Article › peer-review

  • Semaphorins 100%
  • Integrins 65%
  • T-Lymphocytes 43%
  • Antigens 35%
  • Contact Dermatitis 32%
  216 Scopus citations
• 2006

  Drosophila Plexin B is a Sema-2a receptor required for axon guidance

  Ayoob, J. C., Terman, J. R. & Kolodkin, A. L., Jun 2006, In: Development. 133, 11, p. 2125-2135 11 p.

  Research output: Contribution to journal › Article › peer-review

  • plexin 100%
  • Semaphorins 91%
  • Axon Guidance 81%
  • Drosophila 59%
  • Central Nervous System 23%
  62 Scopus citations

• MICAL flavoprotein monooxygenases: Expression during neural development and following spinal cord injuries in the rat

  Pasterkamp, R. J., Dai, H. N., Terman, J. R., Wahlin, K. J., Kim, B., Bregman, B. S., Popovich, P. G. & Kolodkin, A. L., Jan 2006, In: Molecular and Cellular Neuroscience. 31, 1, p. 52-69 18 p.

  Research output: Contribution to journal › Article › peer-review

  • Flavoproteins 100%
  • Mixed Function Oxygenases 78%
  • Spinal Cord Injuries 67%
  • Axons 61%
  • Nervous System 56%
  49 Scopus citations